Array 1 58000-55644 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000020.1 Clostridium tetani strain 4784A contig_0020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 57999 30 100.0 35 .............................. CTTTCTATTAAATTTAAATCCACAATCTTTATATA 57934 30 100.0 38 .............................. CAAAATTGTTGATTTTATTATGAATGAACACAAAGAGT 57866 30 100.0 37 .............................. CTTCATTATCACTTTTAATTAAAAGACTACTTTTCTC 57799 30 100.0 36 .............................. TTAAATGAAGGTACTAAATTTAAGGTAAGAATGGTG 57733 30 100.0 36 .............................. AGCATTCCTCTATCTCCATTAACTACTGAAAAAGGA 57667 30 100.0 36 .............................. GCTATAAGAATAATTCTAATTTTATCCAAGGAACTG 57601 30 100.0 38 .............................. TTCCAATTTTACTAGCTGCTACCCCAACGCCTAATAAT 57533 30 100.0 37 .............................. TAAATATATTACTTCCTTCTTGCACTGTAGGTTTTTC 57466 30 100.0 35 .............................. TTGTTCGTAACTGTTAAAGCTATCTTTCTTTATGC 57401 30 100.0 37 .............................. AGAGCCTAGTTTCCTAAGCCCTTATAACCAACTTACC 57334 30 100.0 39 .............................. ATACAATGCTCCATGGAAAGGACTCCACTTAGATATATA 57265 30 100.0 36 .............................. CCCACATCATTAAAGGATATAAAATTACCACCTTCC 57199 30 100.0 37 .............................. GTTTTAATATTAATATCGGCAAGTGCTAATTCATATG 57132 30 100.0 36 .............................. AACTGCACAGTATCACCGCTAGCTTTTAATTCTTTA 57066 30 100.0 36 .............................. TTTTGAAGTATATTATAAAGGCACAGTAACACGCCC 57000 30 100.0 35 .............................. GCTTTAACTCTTAAAAAAGATAAAGTTCTAAATTC 56935 30 100.0 36 .............................. AAGATGCAGCCAACGCACTTGGATATATGGCTTTGG 56869 30 100.0 36 .............................. GGTAATGTAAGTAATTCTACAACCAATAATAGCAAT 56803 30 100.0 36 .............................. ATACAGAATACAAGATTATAGTTAGTGGATATAGAA 56737 30 100.0 35 .............................. AATGAAGTCAAATAATAACATACCATTTTGTGCTC 56672 30 100.0 36 .............................. TTTAAATCTGGTTTATTTTTTACATTCTTCCAATCC 56606 30 100.0 37 .............................. AAGTGCGTTATTTACGCCTTCTATATGTCCGAATACC 56539 30 100.0 36 .............................. TTTTCATTAGCAATTCCTTTGTACTGCCATCTTCCG 56473 30 100.0 38 .............................. CCTAGTACGCCCAGCATACCCAAAAAAGAACTACTTAA 56405 30 100.0 38 .............................. CTGGAAAGAGGCAATAAAGCATTAGGAATAATAAAATG 56337 30 100.0 38 .............................. CTTACTAACACTTTCAGACCTAGTATTAAAATAATTTT 56269 30 100.0 37 .............................. GTGTTACATCTCCCAATTTCTCCTCATAATACTTTAA 56202 30 100.0 36 .............................. GCTATAGCTAGTATAGTAGATACGTTGCGAGAATGG 56136 30 100.0 37 .............................. AATTAATATTGGCAGTATATGCTATACCATCTATAGC 56069 30 100.0 38 .............................. TATCTAACTCAATATTTTCTTCTTTTACATCCTGTTTA 56001 30 100.0 36 .............................. AAATTAATAAAGATAGTAGGTTAAAGGGTATATTAG 55935 30 100.0 36 .............................. TTATAAAATTCTATTTCTAGTTCTTCTTGAGTATAT 55869 30 100.0 35 .............................. GTCGACCCATTGGAGTTAGACAGATGGGATTTTCA 55804 30 100.0 36 .............................. TTAGCATCTATAATATTTACTTCTTTAATAGTTCTT 55738 30 100.0 35 .............................. ATATGTGATGATGAATTAGAGAAAGTGCTTGAAAG 55673 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 99.9 36 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : AAGAATATGAACCATTTAAAATATGGTGGTAGGAGAGATTTAAATGTATGTTATATTAGTTTATGATATAAAAAGTGGTGAGGAGGGGCAGAGAGTTTTAAATAGAACTTTTAAGGTATGTAAAAAATATTTGTCCCATATTCAAAACTCAGTATTTGAAGGAGAATTAGCAGAGTCACAAATAATTAAACTAAAATATGAATTAGATGATATAATAAGAAAAGATAAAGATTCTGTAATATTATTCAAAAGTAGAAATAAAAGATGGTTAACTAAAGATATGTGGGGTAAAAAAGAAGATAGAACCAGTAACTTTATTTGATTGTCTACCTAAGATGATGTTAAAATATAAGGGAGTAGACAATTATAGTTATATTAATGGTTTATAAATTATTTAACATAACTTGTATTATAATAATAGACTATAAGAAATCCCAACTTAGTAGGTAGACAGAAATAGAAGTTATACTATAGACATATAGTGCATCATAGATGAACGC # Right flank : TGACTGTAACTATAGTATAAATAGGTAAATAGGGACGGTTAATGAATTTTTCAAAAGTATGATATAATAAAAACATAATTTACTTGATGAGGTATGATATGGATTTTAATGAAACAATATATAATAGAATATTAAAATTTGTTAAGGAGAATCCCGATAGTGTTTATTTGCCACAGGATTTTGATGAAGCGGGAAAGAAAGATGCATATTTTATTTTTAATGCGAAATGCGGAACGGAAAAATTTGAAATTGAAAATAGCAATAATTTAATTAAGCTTATATCAAATTATTTAAATGATGAAGCTCAATATAATGATTTAATAGAGTATATTCATGAGTTTCCAATAATAGTATATTATTTTGAGTTTTGTAGAATACTTGAAATGCAAATTAAGGAAAGCTTGTTAAGTAGGAAAAAGGTCATAGAGGTAGGAAAAAAATTTGTCACCGAAAGTAATGATAACGAACAGATAAAGCTTGGCATTGCTTTACTAGGGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 49-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000029.1 Clostridium tetani strain 4784A contig_0029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 49 30 100.0 36 .............................. TGAAAAACAGTAACATGAGTGTATTCATGTTACTGT 115 30 100.0 34 .............................. AAATACGGAACTATTGTAGTTCTACAATTAGGGT 179 30 100.0 36 .............................. TTAAGATTTACTTCATTTCCCCAACAGTCCCAACCT 245 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 310 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 376 30 100.0 34 .............................. TAATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 440 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 504 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 570 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 637 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : AAACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 394534-394952 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000028.1 Clostridium tetani strain 4784A contig_0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 394534 30 100.0 36 .............................. CTTTGTAACTACAATTGCTGTAACTATGTTTGATGC 394600 30 100.0 36 .............................. TCATTCATAGCATTGTTAGCAAATTGTGTAGCATTC 394666 30 100.0 34 .............................. TTTATCTTACCCCCAAATATAATCTTTAGTCGAT 394730 30 100.0 34 .............................. ATGTTTTCACTATATTACCACTTCCTTTTATTTT 394794 30 100.0 34 .............................. GCAAATTCTATTATTTTAAGTGATTTCTCTATAT 394858 30 100.0 35 .............................. AAAGGAATGTAATTTAAGTTCTAGAAGTGCAGCAC 394923 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAAACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTTTAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATTGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 396927-397218 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000028.1 Clostridium tetani strain 4784A contig_0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 396927 30 100.0 34 .............................. TTAAAATATGAAGATGAAGAAATAACAGAGAAAG 396991 30 100.0 35 .............................. GTGTTAACCCATACTCTACCTTCATTTCCACTTAT 397056 30 100.0 36 .............................. CAAATAAGGTAAAATCTTTGGTTATTTGTGGTTAAT 397122 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 397189 29 86.7 0 ...A............T.-..........A | T [397203] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATTGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAATGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 406520-406809 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000028.1 Clostridium tetani strain 4784A contig_0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 406520 30 100.0 34 .............................. TAGAAATATTTATAAGCTTCCTTTAAATCTCCAA 406584 30 100.0 34 .............................. CCTAAAAGAGATTATATAAAAAAGTGCAACTCTT 406648 30 100.0 36 .............................. CAACATGAAATTATTGTGAAGTAGGAATTTGATGTT 406714 30 100.0 36 .............................. TTAGATTTTTTATTTATATTTAAAGAAAGTGCATCC 406780 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAATTAGATAGCATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGTGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 408931-409092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000028.1 Clostridium tetani strain 4784A contig_0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 408931 30 100.0 38 .............................. TCTAAATCTGGTAGATGGTTTTGAGGTAAGTTTTGTAC 408999 30 100.0 34 .............................. ACAATGAATAAAAAAGAATTAGTAGAAGCTTTAA 409063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGTTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATGTTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 413242-413662 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBJ01000028.1 Clostridium tetani strain 4784A contig_0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 413242 30 100.0 36 .............................. TCCTTTGAATATCTTTGAAATATGGCTATTGCATAT 413308 30 100.0 35 .............................. ACTAAATCCACATCTTTGTATTTATCTTGTAGCTC 413373 30 100.0 37 .............................. AAATATATATGAGCATAGCTCAAAAGGAGAATTAATA 413440 30 100.0 35 .............................. TTTTGTAAGCATTCATTATCGTTGTTAAAACATCT 413505 30 100.0 34 .............................. GAAGTTTGCCGACCTAGATTGATACGGAACACAC 413569 30 100.0 34 .............................. ATTGCTGTAAGAGAATATATTTTATCTGGATTAA 413633 29 90.0 0 ................-.A...T....... | T [413647] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTTTATTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCTCATATGCCACACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //