Array 1 154681-153253 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAK01000003.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain 96-0265 NODE_3_length_345603_cov_4.51508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154680 29 100.0 32 ............................. GGTATTTATTATGACTTGTGGCAAGGATTATT 154619 29 100.0 32 ............................. CGCTGGTTAAATGTGATTATGACCCGCGTTTT 154558 29 96.6 32 ............................T TCCAGCAACTTCAGCGTATCGGGGCTGAAGCC 154497 29 100.0 32 ............................. CCCTCCAGCGCGTCCATACTTCCTCGGCCTTT 154436 29 100.0 32 ............................. TTTCCTCGGAAAATACTTCTTCCGGTGGCCGC 154375 29 100.0 32 ............................. ATAAATTTGGCACCGGGAAAAACGGGTTTACC 154314 29 100.0 32 ............................. CCGTTTGCCACGCCTGAATGGTGTAAAGACGC 154253 29 100.0 32 ............................. GTTCATCACTAAAAGGCTTAATCGATGAAAGA 154192 29 100.0 32 ............................. TTTCCGGTCTTGCGGAATTTCCCATTATAGGA 154131 29 100.0 32 ............................. CAGTTCGACCAACTTTTTGAGCAGTACGACGC 154070 29 100.0 32 ............................. CAATTGCTGGTGGTCGGGAGCATGAATTCAGA 154009 29 100.0 32 ............................. GCAATGAAGGGGCAAACATTACTGGAGACTGA 153948 29 100.0 32 ............................. CGACTTCATGGATGCGCAAGACAGTGCCATTG 153887 29 100.0 32 ............................. GACGAGGCGGTCGCTCTTGGGGAGGGGTGCGC 153826 29 100.0 32 ............................. CGTGTAAACCGCCGTGAGCGTGCGCCTCATAA 153765 29 100.0 32 ............................. AGTTGCAGTGGTGTATTAATATTGCAATGTCA 153704 29 100.0 32 ............................. ATTTGAAATATGAACTGGATGAAGAATATCGG 153643 29 100.0 28 ............................. TAATTAATTAAGAAAATGCCTGTAAGCC 153586 29 100.0 32 ............................. CGTGTAAACCGCCGTGAGCGTGCGCCTCATAA 153525 29 100.0 32 ............................. AGTTGCAGTGGTGTATTAATATTGCAATGTCA 153464 29 100.0 32 ............................. ATTTGAAATATGAACTGGATGAAGAATATCGG 153403 29 100.0 32 ............................. ATGGCGCACATGGCCCGCCAGTAGTCGGCGTA 153342 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 153281 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCGTTCTGGCTGAGGGCGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //