Array 1 60442-59543 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNFY01000002.1 Dolosicoccus paucivorans strain UMB0860 ERR1203707.17957_2_30.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 60441 36 100.0 38 .................................... AACTTTGATGTTGTTGGTAACGTAGACAACGCTTATAA 60367 36 100.0 35 .................................... ACAACCGCTCCGGCTCCAACCATAAAGTTTTTGTT 60296 36 100.0 35 .................................... ACAACCGCTCCGGCTCCAACCATAAAGTTTTTGTT 60225 36 100.0 36 .................................... GAGATGAAACGTAATGAACCATCAGACGAGGTATGA 60153 36 100.0 35 .................................... AAATTTTTCCATTTTTCATTTCCTTCTTTCTATTT 60082 36 100.0 39 .................................... TAACAAATACATGTCCCTAACATTAACCTCTGTAATAAA 60007 36 100.0 33 .................................... TCGATAATCTTCACGTAGCTCTCGAATAACTTT 59938 36 100.0 34 .................................... TCTAGTTTAAATAATGCGTAATGAACCAATTCGT 59868 36 100.0 36 .................................... ATTTTCACTCATAACTTTAGCAAGCTCTTCTGTTGT 59796 36 100.0 39 .................................... TTAATAGCATGGGCTACCCTCCTTTATAAAAAAAGAAGA 59721 36 100.0 35 .................................... TAATCTATGTCGAATTCGTAAACAACCCTTGTTTC 59650 36 100.0 34 .................................... GCTATTGACCTCTTGCACCATCGTCATTAATTTT 59580 36 94.4 0 ...............................T...A | TT [59546] ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 99.6 36 ATTGATGAACCTTATTCCTCGTAAGGGGACGGAAAC # Left flank : GTCCTATCGGGAGACAATAATCGCTTCTTTAAACATCCTACGGCCCATCAACTGTTGAATATAGTCAGACATTATTATAAAGGCTCTACTGCAGTCGTTAAAAACCTTGAAAAAATGCGAGATTTTGAAAAAAAATTAAGAAACGTAGCAGCTCATCAACCGCGTGCCTTTTCAAAAGAAGAGATTATAAAAATAGCTCACATGAGTATTGAAGATTTTAACAAACAAATTAGGGTTCTTGCTCAAAATTGTAACTTCGTTTCAAAAGAGCAATGGAAAGAATATGACCAATTAAATGAGTTGTTAAGTGAATTACTAATTTAGAATCTTCTCATAAATATATCCTTTATTTTGAACTCAAAATCAAAGTAGAGGATATATTTTATATTTGTTATACTAACGTTAGGTGGTATCAATGAATCTATTAATAGAAAACAAACTGATTTTGCATACAAACACTATATATAGTTTCTTTTTTATTATAGTACACAAAATGTGCC # Right flank : TAAATGCAGCGTAAAAATTCTTCATTCTAACAATTGAATGAGGAGTTTAGTTTATTTATAATTGGAAAGATGATAAAATGTGAATATATTAACTTGAGTGATAGGTAAGAAGATGTTAGATAAATAAAGGGGTATTATGAAAGAAATCTATATATTTGAGTCGGCGCAATCTCTTCATTATCGAGATAAAAAATTAATTGTTCAGAATAAAGAAGGTAAAAAGGCTTACGAAGTAGCTGTTAGTCAAGTCAAGCGGGTCAATATTTTTGGAAACCCTACAATTACGACTCAATTACTTAAAGCTTTAGCTCTTAACAAAAAAGAAGTGCATTATTATTCTCAAAATGGAAAGTATTTAATGAGTATGAATTTGCATTACGCGGAAAACTATTCAAGGCAACAAGAACAAATATTGGCGTTATTGGATGACTCCTTTTCTTTAGCGTTATCTAAAAGATTGATCCAATCAAAAATAAAACTCCAAGCGGAGTTATTGAAAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGATGAACCTTATTCCTCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 39330-40422 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNFY01000018.1 Dolosicoccus paucivorans strain UMB0860 ERR1203707.17957_2_30.18, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39330 36 100.0 31 .................................... CAATGATTCAAGGGTTGAGGGAAGGCAAGAA 39397 36 100.0 29 .................................... ATACAAGCAATTTCTTATGCGGATGACAT 39462 36 100.0 30 .................................... ACGGCCTTTGGCGATATGGCGACTCGGGTT 39528 36 100.0 31 .................................... ACGGCGCTTTCAAAGATCCTAAAGTCACCGC 39595 36 100.0 30 .................................... AATAATGGATCGAACATCACTCGCCGTGAC 39661 36 100.0 30 .................................... TGTCGGTTTTTCGTTCGAGGTTACCTACCT 39727 36 100.0 31 .................................... TGGTAAGCTATTCTGATCATGAGGTAGCGAA 39794 36 100.0 30 .................................... ATGAGGTTGCACCGTTAACGATTGGTGGCA 39860 36 97.2 30 ...........................T........ GTGAAAAGCGTTCGAAAGAAAACGGGGCTA 39926 36 100.0 30 .................................... CATTCCCATATAAGCCCGCCCGCGTGGGTC 39992 36 100.0 30 .................................... GGGCGGTGACTTTAGGATCTTTAAAAGCGC 40058 36 100.0 30 .................................... GAAATTGAAGAAGAAAGTGGCGACAACCTC 40124 36 100.0 29 .................................... TTATAAGTCACTTTATACCCGACAGGACG 40189 36 100.0 30 .................................... CATAGTAGTCTTTTATTTTGCTTATAGCGC 40255 36 100.0 30 .................................... CTGTAAAGTATCGGCATTAGAGTAGTGAGT 40321 36 100.0 30 .................................... CTAATAAATTTTATACTATTGTAAAATATT 40387 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.8 30 GTTTGAGAGTAATGCAGTTTTTTAAGGGTCTCAAAC # Left flank : TATCTACAAGCAGACTATGAAAAAGTGACAGCTTTGAAACAGACTATTGTAGAAATTTTTCGGGAGTGTTATTTTGACCAAGAATTTGATGTGTTTGTAGGGGATGAGTTAAACTTAAGGACTTTTGCGAAAGTATTAGACATTTCTGTTGATTTTGATGCGCCGACCTTAGTAGAGAGATTAGTAAACTATATCGAAATATCCCATCGATTAGAGCTGTATAAAGTATTTATGCTAGTTAATCTGTCACTATATTTGAACAAAGAAGAAATCAAACTGTTTAAAAAAGAAATGGTTCAAAAGAAAATTCCTATTATTTTACTGGAATTCGATCATACGCACTCTAGCGAATGGGAAACAAACTTTATTGTCACTGAAAATCTCAGTGAACTCTTTTAATAACTATGTTATAATAAATTTTGTCGATATAGTTTTGAGACAACAACTTAAAATTAAATTCGCATTCCTCTTAAATGCTCAGCTTACTTTGGAGATTTGAG # Right flank : TACTATAACCTACTAAAGTTTAGTTGTCAGTTTGAGAGTAATGCAGTTTTAATAACTAAATTTAAATACATGATGAATTGCAATAATTATTGCGACAAAAAGTTATTCTAACTGAACGAGTTCGTGCATGAGTACTTCAAAAGGTGTTTTAAAATCTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGCAGTTTTTTAAGGGTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //