Array 1 2817804-2818319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBDY010000001.1 Nocardiopsis terrae strain DSM 45157 Ga0415212_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2817804 29 96.6 32 ............................T GGAGCTTTCCGAGAGCGGAGTGATGACACTCC 2817865 29 100.0 32 ............................. TACGGCGGGTACACCTTCTCCGCGGACCCGCG 2817926 29 100.0 32 ............................. ACCTATGTCTACATCGGTGCGGCCGTGGTGGT 2817987 29 100.0 32 ............................. CCCTTCACGCAGGGGCTGGCGGCTGCTCGTCG 2818048 29 100.0 32 ............................. TCGTTGCGGGTGAAGGCGTCCTCAGTGCGGAA 2818109 29 100.0 32 ............................. CCACCTCCAGGCGGCGGAGCCCGGCCAGGGCC 2818170 29 100.0 32 ............................. TCGCCCTGGAACTGGCCGAGGCCAGGCTGGAC 2818231 29 93.1 32 ..............T..........G... GGGCAGACGGTCACCACGATCCGCGCCCAGGC 2818292 28 82.8 0 ..........T...T..-....A.A.... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCCCCGGTGAACTCCCGCAGTGACTCCACGGGGGCATCCGAGTCACGGAACCGTTCGGCTGTCGCCCGCAGACCGGCAGCTGCCGCCGTGACCAGGTCGCCGAAGAGTTCCTCCTTGGTGGCGAAGTGGCGGTAGATCGATCCGGTGCTGATACCGGCCTCCGCTGCGATCCGGCGCATGTTCACCGCCGCGTACCCGTGGCGTGCGAACAGCCGCACCGCCGCCGAGCGCACCCGCTCCCGGGTGGCGGCACGCATCGCCTCGTGCTGTTCCGGAGTCCGTGGCATCGATCGTCAGCCTCCCGTTTTTTGAATGAACATGTGTTCATTCTATCTAGGGCTGCGTGGATGGCAAGCGAGTTGAGTTCGTCCCAGGTTGCGGATGCGGTGGTTCTGGGCTTCTCGGAACTCGTCCGGGTCGTGTCATGATGGCTGGGCGCGAGCCAGCTCGTACCTTTGTTGCGGGGAGATAACGGCTTGTGTTGTCGCAGGTCATTAACT # Right flank : GGGGCCTATGAGTGCACTCGGGGCCGAACAGACAAGGTGTCGCCCAGCAACCTGAAACGCCACCGGTCCCTCGCCGACAGTTCTGGCAAGGGACCGGTTCGTGCTGTGGCTACTCGGTGGAAGCCACCGTGCTCAGGAGAGCAGTCCATTCGGCACTCGCGAAGGTGAGGTGCCCGGATTCGCGGTTCTGGGTGTCCCTGACCCGGGTATCCGATCCTTCCGCCACCTCCACGCAGCTGCCGCTACCACCGCTGTAGGAGGACTTGTGCCAGAGGTGTTCAGTTGCCATTGTCGTTCACCATTTCCTGCAACATCTTGAGGGTGGCTGCCTCGGGCAGAGCTTCGCCCTGGAGGAGCCCGAAGCTGGTCAGACATTCCTGATGGCGTTCAGGGTCGCTGATGACGATCTCCCCGGTCATGTACTCCGCCGAGGCCACAGGGGGTTCTCCGGCGAAGGTGTACAGCCGGAACGCGCCACCGTTGCCGTAGTGGCGGCCGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 3176324-3175624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBDY010000001.1 Nocardiopsis terrae strain DSM 45157 Ga0415212_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3176323 29 100.0 32 ............................. ACCAGCGCCATGACGGCCGCAGCTTCGCTGTG 3176262 29 100.0 32 ............................. CTGGAGGACTCCGACGGCGACCGCACCACCGC 3176201 29 96.6 32 ............................T CCACTCCTCCCTCTTGATTTGGTGGGTGTAAC 3176140 29 100.0 32 ............................. GTGTCGCGCGCCCCGAGTTCGAGGTCGGTGAT 3176079 29 100.0 32 ............................. ACGCCGTCGTCGGTGGCGTGCTCGACCTGCTG 3176018 29 100.0 32 ............................. CTTCTCCCACATCACGGCCTGTGGTCGCGTCC 3175957 29 100.0 32 ............................. TAGATCGTGTCCTTCATGACGCCCAGGGGAGC 3175896 29 100.0 32 ............................. CCTTCCGGCCCCCCGAAGAAACCGCAGGCTCC 3175835 29 96.6 32 ............................T GGGATTCGGCCAGGGCGGCCCTGGCCAGGTCA 3175774 29 100.0 32 ............................. GAACTGGCCAGGATCACCCGCGAGGACCAGGC 3175713 29 100.0 32 ............................. ACGAAGCGGTCGCATCGGGCGGTGCCGATTCC 3175652 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GGGTTCTCACCACCGCCACCCTGATGCTGTTTCTCGGGCTGGGCGGCCTGTTCACCACCTCGGTGGTCTTCCTGCTGGCCACCCTGCTCGTGCTGACCTTCGCGTTCTTCTGTGCCCACGCCACCGCTTCCGCGTGGGTGGGTTCCCAGGCAGTGACCGGCCGCGCCCAGGCCACGGCCCTCTACACGCTCGCCTACTACCTGGGTGCCAGCCTGTTCGGGTGGCTCGGCGGGGTGGTCTACGACGCGGTGGGCTGGAACGGCACCGTGGCCCTGGCTCTGACGCTGACCGCCCTGGCCGGACTCATCGCGCTGCGTCTGCGCCGCCTGCCCGCCCCGGACCGTGCCTGAGTGCTTCGGGGGAGGTCCCGGTGGGTCGGCTCGTACCGAGGAAGGAGTTGTAGCCTTCCGGGCCTTCGGATGTTCGTATGCTTGGGAGTACGGGCTGCCCGAGTGAGATCACGCGAAGATAACACTCTGCGTCGTCGCAGGTCATTAACT # Right flank : GTCAACCCCCTGAAAATCTGACCTGCTTCTTCACCTCCACCACCTTCCCCGCTCTGCTCGTTACCGTGGTCGTATGCCTACCGAGCTGCGCAACGCCCCCACCCCCACCGAGGTCATCGCCGCGTGGATCCCACATGACGCCCGCTGGAACGCACAGGCCCGTCAGGCAGCTCGGGCCGGGGTCGAAGCGCTGCGCCGGTACGTGACCGGGCTGATCACCCACCACCGCGACGGCGGTCTTCTGGTGGACGACGACTTCGACCTGCGCAGCATCGCTGCCGTCGTCGAGGACCTGGAGGAAGGCGGGCTCTTCCGGGTGAGGTGGGACCAGGCGCAGGACGCCCTGCTCGTTCCGGACAGGGCCGGGGTCCGGTAACTGGAAGCGACCACCCCGGAGACGACCCCGCAGACGTTCTCGGTTCCGGCTGAGGCCGTCGCGTGTGAGTGAGCCCCGGACGCGCTTGCTTCTGCCGAACCGGACAGGGCAGCGGCGGCTGCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 3349388-3348749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBDY010000001.1 Nocardiopsis terrae strain DSM 45157 Ga0415212_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3349387 29 100.0 32 ............................. CAGATGTACTCCGGGTTCCTCGGAGGGCTGCT 3349326 29 100.0 32 ............................. CACCCCGGAGCGGACTGGACATCCGGTACGCC 3349265 29 100.0 32 ............................. TCCAACACGGAGGTCAAGCTCTCGCCCACGGA 3349204 29 100.0 32 ............................. GAGGACTCGAAGGAGGAGAAGCCCAAGGAGGA 3349143 29 100.0 32 ............................. AGAAACCCCTGTGATCACCTTCGGAACCTACT 3349082 29 100.0 32 ............................. AGAAACCCCTGTGATCACCTTCGGAACCTACT 3349021 29 100.0 32 ............................. ATGTGGTCCTTCGTGGCGGGGTTGGTCACCAC 3348960 29 100.0 32 ............................. GTCGTGGCCCGGATCCCGTTCTTGTAGGCACT 3348899 29 100.0 32 ............................. GGCGTGTACCCCGAGGCGGGTGTGCAGATGTC 3348838 29 100.0 32 ............................. CGTCTTTTACGGCAACGCGGCACCCGACTGCA 3348777 29 93.1 0 .......................AA.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : ATCACCATCCCCAGGGCCGCGGCCGAAAGCGTGAGGGAACGGAGCCGGCGGGACGGCGGGAGGGGGAGTCGTCGTGGTGGCGCATGTGTGTCCTCGTTCCGGTGGGTTCTCGGTCGCCCCCACCATGGATGACCAGGGTGAACCCCGGTTCGGTTGCGGGTGAGGGCAGCGTGAGAACCCGGTTTGTGTACCGGTGTCTTCGGCGCGGGTACGGGCGGAACGGCTCTGTCAGCTTTTCTCTCCTCGTACCTGGCCAGCTTCTTCGTCTTGCTGTGGCCCCAGAGCTGATAGCTGCCGCTTTGGTTTCGTGGGGGAGATATTCCAGGCCACTGCCCTGTACACCTCTGTTGCCTCCCGGGCAGGGCGGAGGTCAGGGCAGGGTGACAAGCTGTCCTGGCAGGCCCCGGGGGATGTGGGAGCATGGGTGGCCCAGGTTCTGGTGTGAGCCATTCGGAAGGTTAAGCGGAGATAACGGCTCGCGTCTTCGCAGGTCATTAACT # Right flank : CCAACGCCATCCGCTAGGACCTCTACCCGAAACACGCGCACATACAGCGCTGCCCCACGATCACCGTGCGCATGTCCAGTGCTGATTGGGACTGCGGCTGCTCATCGGAGTGCACGCACGGCGACCAGTTCGAGATCCACGCTCTCACCGAGTGCGGATACAGGACCGCGTTCTCCTGGCGGGCCATGTAGCTGTGGTGACCTGCCCGCCGTGATCGACGTCCTGGACTCCTATCGTGAAGGGCCCGACTGCGCGTACTGGCGGGGCGGCGACGAGTTGACCTGACCCCGCACAAGACGACGCCCGCGGCCAGCAGTGCCGCCATGCACGAGCTAGGGGATCTCCACCACAGCCATTTCCGGAGCCTCCTCGGCGGTCAGGCTGAGCACGGCCAGCTCGGTGCCCTCGGGTACGTCGAACACCACCTCGTACTCCGAGGTGTTGCCCGGGTTGGTCTCGTCCGAGAACGAGCAGATGTCCCCCTCCAGGGAGTACTCGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 3488300-3487234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBDY010000001.1 Nocardiopsis terrae strain DSM 45157 Ga0415212_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3488299 29 100.0 32 ............................. CCGGTCATGGCGCGCGCCACCGCGGCCGTGTC 3488238 29 100.0 32 ............................. AGCTTGTACCGGCCGGAGGTGTACACGCTCCA 3488177 29 100.0 32 ............................. GAGACCGCGCCCCGCTCCCATCCCTTCTCCAC 3488116 29 100.0 32 ............................. GGCACGGGCCAGCTCCGGGACGGGGACATCCT 3488055 29 100.0 32 ............................. TCAACGCGGAGCCCAGATCGGGGAACCAGCCC 3487994 29 96.6 32 ............................T CCCCGAGGGCGGCCCCGAGTTCGAGGGCTTCG 3487933 29 100.0 32 ............................. TCCCGGTTGAGGAGTGGGACCCGTACCTCACC 3487872 29 100.0 32 ............................. CAGACGAAGAGCACCCCGCACCGACTGGTGTG 3487811 29 100.0 32 ............................. CTGTACCCGATGTCGTCCCAGCCGCGGCTGGG 3487750 29 100.0 32 ............................. CCGCCCAGGTCACGATCGAGACCGCCCCCGAC 3487689 29 100.0 32 ............................. CACGTCGCCGTGGTCGTCGTGCTCCAGGCCCT 3487628 29 100.0 32 ............................. AGGATGCGCCCCAGCAGGGCGGCCTCGGCCCG 3487567 29 100.0 32 ............................. GCGTTCGAGCAGGTCGGGGTTCCTCACGCGGC 3487506 29 100.0 32 ............................. CCGCCCAGGTCACGATCGAGACCGCCCCCGAC 3487445 29 96.6 32 ............................C AGTCCGAGTTCGGGCTCGCGGTGCAGGGCCCG 3487384 29 100.0 32 ............................. GTTCTGGAGGCCACCCCGGAGGAACTGGAGAC 3487323 29 100.0 32 ............................. CACGGGTGCGGTCCGCCCTCCCGGCGCACCAC 3487262 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TGACGAGCGCGTGGCCCTTCTGCTCGCCGGGTTCGGTTGGGTAGGCGGCGAGGTCTGTGGGGACCTGCTCCTGGAAGTGCCGTACGAGTTTCCCGGTGTCGTGGCACCCGGCCCAGAAGGCGATCAACGAGCGAGCGTGCGGTTCTGCTACTCCCAGTCCGGTGCTGATGCGGTGTCTCAGACCTTGAGGGAGGCAGGCGTCCCAGATCTCCAGGGCAGCGGCGACGCTGTCGAGTGCGTGGCAGACGTAGGGGTATCGCTGGCCGTGAAGGCCGCGTTCTTTGGCCCAGAGCCTGAGATCGAAGTAGGAGGGGGTGTCGGGAGGAACCGCGGTCACGGGGGTGCGCTCCGTGGGTGTGTAGTGGAGTATGTGAGGCGACGCTAGTTCCCTGGCGGTTGGATGCGGGGCGTTTTGTGGTTTGTGGCCGAGTTCGGCCAAATTCCTACTCCTGGGTAGGTCTCGCGGAGATAACGCCCTGCGTTTTCGCAGGTCATTAACT # Right flank : GTGGAACTCACCGCCCAGCGTGCTCAACGCTTACGCGCGAGCCCTCCGTACTGGTCGACCTTGCGGACGCGTCCCACTTCGGAGTCCTGCGGCCGCCACATCGTCGCGGACACCACGCCGGGTTCCAGCAGATCCAGCCCCTCGAAGAAGCGCGCGATCTCTTCGGGCGTGCGCAGGTTGTAGGGCAACGGCGCCGTGTCGTTCCACCGCCGTGCGGCCTCGATCATCGGTTCGCTCGTGCTGGTGCCGTCGCACAGGGCCAAGAAGCTGCCCGCAGGCAGAGCCCCGACATAGGCCCGCACGAGGTCGTAGGCCTGCTCGCCCGCGTAGTGACCCATCGTGCCCAGGATGGTCAATCCGATGGGTTCGGAGAAGTCCAGGTGTTTGCCGACCCGGGCCAGGAGGGTGGCCGGTTCGCACAGGTCCGCGTCGATGTAGTGAGTGGCGCCCTCGGGATTGCTGGTGAGCAGGGCACGGGCGTGGGCCAGGACCAGGGGGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //