Array 1 600996-601221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016087.1 Clostridium saccharoperbutylacetonicum strain N1-504 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 600996 30 100.0 36 .............................. TAATATTAATAAAAATTCCTCTAGTTTTGATACTTG 601062 30 100.0 34 .............................. ATAGATCCTCAAACTGTTTAACTTTATTTTTATC 601126 30 100.0 36 .............................. TGTAAAGTAAACTTTTGACCTGCAAATTCCATAAAC 601192 30 93.3 0 ............C................C | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 GATTAACTTTAATATGAGATGTATTTAAAT # Left flank : TATTGTTTGAAATTGAAATATGACTTATTCATATTTTAAAGAATTTCAAATTAAAAAAAGAATAGTTTTATTGTTTGCTACATATAATCTACGATTTATTTTTGCTACGTCAAATCTACATGTTATACAGAGATTAATTTTAATATAAGATGTATTAAGTTTAGATATAGTAGAGAGCAGTAAACAAACAGTATACCTGTAGCCAAAGACATTATTTCTTACTCTTGCATGAATTTTATTTCACTAGCTACATCATATCTGGCATTAGATAGAATATAAATTAATAAGTTTTTTATTAGTTTATAATTCAATATTTCTAAATTTTATCCCAGGAATAAAGCAAGATAAATTCCATTAAAGTAAGTAAAAATGAGGACTTAAGAAGAATTTTTTGAATGTTAGCTAAAATTCATAAAACGGCTGGTAAATTTTTGTGTGGAAGTTGATTCTAAGAGGGATGAATGGTATTATTGATTTTAAGGAATGGCTATTTGGCTATG # Right flank : CTCAAATAGTTAGTGTGTCCTATACTAGTATTACGTAAAAAAATACCGTAAATTAATAATGCGGTATTTCAATTTAATTACTTTATATTTAGTTTTCTATCAGTTTTAATATCTCATTATTTATTACATCAGGATGCGTATGATATATGGCATGTCCTGCTCCATCAACTACTATTTGCTCGCTATTTGTTGACCATTCTTTTAATTTAGCTTGACTGTTATTCCATACTTCATCATCTGGAGCTGTTAAAATTTTTATAGGCAAATCACCTAAATGTCCATTTTCCAATACAGTCTTGGCATTACTCATTGCCAAATTACCTTCATCTATAATATTGGTATTATACATAGTTGTTAAAATCATTGATAAATATGTTTGTTGTAAATTATCTGGGAGTAAATTAAGATTTTTTGAATAGTAATTTGTATGATTAATCACTAACCGTGCTATTCCTATAGATTTTAAAAATTTATAAGAATAAGCTGTACTCTTAGAAATT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACTTTAATATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 3637173-3635366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016087.1 Clostridium saccharoperbutylacetonicum strain N1-504 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3637172 30 100.0 32 .............................. ATAAAGCTAGGTTCTGGGCAGCGACACCAAGT 3637110 30 100.0 36 .............................. TACATAATTAGTGACGAATTTAGCTTCTTTTAGTTG 3637044 30 100.0 36 .............................. GGGAATATATATAATTGCAGGTGCTACCCAGAACCT 3636978 30 100.0 36 .............................. ATTAATTTTGCCCTTATCATCCTCTAATTGAATATA 3636912 30 100.0 36 .............................. CTTAACACTACTTGTACAATAGAACGGGCTAGAGAA 3636846 30 100.0 36 .............................. CAAAGTAAGAAACGAAAAAAGAGTAACGCAAAAACA 3636780 30 100.0 36 .............................. ATAGTAGCTTTTATTTCTTCCCATGCTTGATTAGCA 3636714 30 100.0 36 .............................. TCCTTATAATCATTTGAGTTTGAGTAAGTATTGGAT 3636648 30 100.0 36 .............................. TTGGGATACAACAGGAAGTGAAACAGCAGTACAAGC 3636582 30 100.0 36 .............................. GTTAATGTGTTTGTTTTAATTCCTAATGATAAATCC 3636516 30 100.0 36 .............................. AAATTCATTAGCTCCACCGCAATCACATTTTCTTGG 3636450 30 100.0 36 .............................. TGAGAAGTTTTTAATTGATGTAACTGATAAGGCCAC 3636384 30 100.0 36 .............................. AAGCATGAAAGCTAATGATTCAACTATTAAACAGGC 3636318 30 100.0 36 .............................. ATTGATGTTTATACAAGACTTGGAACTTACAAAAAC 3636252 30 100.0 36 .............................. AAGAATAATTCTATATAACATGTATGCTCTGGAATC 3636186 30 96.7 36 ............T................. CAAATATAACATATCATGAATCACATGGAGGAATAG 3636120 30 100.0 36 .............................. TGTTATTGTGATACTTACTTTATGCAATCCTTTAGT 3636054 30 100.0 36 .............................. TTATCAAATGAAGTTAAAATCTTACAAGTTGTATTA 3635988 30 100.0 36 .............................. GGAGCAGAAATATATGCCTGTGCAACAAAGAAAGAT 3635922 30 100.0 37 .............................. GGTGCTAAAACTTTAATTGAAGCATGTTTAAAAAGTT 3635855 30 100.0 36 .............................. TTAATTTACTTTTGTTCAAAATAAAGTTCATGGGAG 3635789 30 100.0 34 .............................. AGGATCATGAATTACATAAAATTAATTGAAGCGG 3635725 30 100.0 36 .............................. AAGGATAAAAGGGATAGCAAGAAAAAAGCCTTAACA 3635659 29 96.7 36 ..........-................... TTAAGTCAGCAAGAAATTTCTACACTATTAAAATTA 3635594 30 96.7 37 ...........G.................. ACTACAGAGCAAAAGGCAAGGTGTGGTAATGCAGTAG 3635527 30 100.0 36 .............................. ATACCTGAACCAGCAAATAGTTCAAAATACTTAAAA 3635461 30 100.0 36 .............................. TCCTTTAGAGTAATTGAGCAAATAACAATTATGTTA 3635395 30 90.0 0 ....A....................A...A | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.3 36 CTTTTAATATATCCATATTGGAATGTAAAT # Left flank : TATGGTGGTAATAGGAGAAATAATATATGTATGTTGTTTTAGTATATGATATAAGTGGAGATGAAGATGGACAAAAAGTTTTGGGAAAGGTATTTAAGATTTGTAAAAAGTATTTAACTCATATTCAAAATTCTGTTTTTGAAGGTGAGATAACAGATGGACAAAGAGCAAAATTAAATGCAGAACTAAATAAATTCATTAGGAAAGACTTAGATTCTGTGATAATATTTAAAAGCAGGAATGAAAAATGGCTTGATAAAGAATTTTGGGGTAAGAAAGATGATTCATTATCTAACTTTTTTTAATAATCCATTGATCCTTTGTCGATGGTACAAACTTTGAAAAAACGGGTAGTGCGACAAAGTATTGAATATAAAAGAGTTATAGTGGTAAACAATTAAAAATACATTATCATTGGCTCAATATAAATAGGTAATGAAAAGACATCGACAAAAACTAGTGTCGCACCCCCCATTAATAGGGGTTAAAATAAGAGGTGT # Right flank : TGGAACTAATAAAACTCTGAAACTAATTATTGATTATTCTGATGAAGAACATATAGGCAGCATGGATGCCATAATAAAAACATATGAAATCGGAAAAGTTTATTTTTATAAGAAACATCAACTATAGAGACATTTAAGAACTTTGTTAAAAAAGTTCAATAGAAGCAAGCTTTTTATTTGAAATTAATCCAAAGTATGCAGTTATGATAATAGCAAAATATTGCAGTTGTAATCATAATTTTGCAATTAACAGCCAGTTAGTTACGGTGGTAAGGGATCTCGAAATTAACACAAGTTATCTAGTTAAGTATAGAAATACTTGGACTAGTAGATAATGGTAGGAAGAATTAAAACTTCCGACATTCTTCCTACCATCAGCAAAATATAATAAAATGCAATTCGTTATTGTAAATAATTATATGTACTTTAAAGCTAGTTATATCAATAACTAGAGAATATACTAGGTTACAATAAAGTACAGGAAAATACGCTGTTTCTAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATATATCCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //