Array 1 38-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWP010000132.1 Escherichia coli strain SA21 NODE_132_length_225_cov_11.918367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 99 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 160 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGACGGCGTGGATTGAGGGACGGGTATTTGGTCCG # Right flank : ACGGCGTGGATTGAGGGACGGGTATTTGGTCCGTGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95594-94893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWP010000003.1 Escherichia coli strain SA21 NODE_3_length_314142_cov_20.852042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95593 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 95532 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 95471 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 95410 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 95349 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 95288 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 95227 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 95166 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 95105 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 95043 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94982 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 94921 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112649-111095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJWP010000003.1 Escherichia coli strain SA21 NODE_3_length_314142_cov_20.852042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112648 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 112587 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 112526 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 112465 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 112404 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 112343 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 112282 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 112221 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 112160 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 112099 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 112038 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 111977 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 111916 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111855 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111794 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111733 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111672 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111611 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111550 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111489 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111428 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111367 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111306 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111245 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111184 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111123 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //