Array 1 8505-6889 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJU01000008.1 Cronobacter sakazakii strain cro663A2 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8504 29 100.0 32 ............................. TATCACGCGGGCATCAACTACGACTTCGACCG 8443 29 100.0 32 ............................. GCCGGGAATATTTTGAGCATCAGATATAACGA 8382 29 100.0 32 ............................. GCTCTCGGCTGCGGGTGGGCTCCAAAAAAACA 8321 29 100.0 32 ............................. CGGTAACGCAAACACATGGTTCGACCTTGTAC 8260 29 100.0 32 ............................. TCCATCGCCGCATCGTCGCATCAGCTATTGTG 8199 29 100.0 32 ............................. GACAGGGTGGACCAACTGCCGCGACAGGCATT 8138 29 100.0 32 ............................. GGAGCGACCCTGTCGTTCTGGCCGTCGCTGCG 8077 29 100.0 32 ............................. CGCGGTAAATGAATTGAACGTTCATAAATATC 8016 29 100.0 32 ............................. GTTCTTGGCGACAGTGAAACGACTCGCGTGAA 7955 29 100.0 32 ............................. TCTGAGAAATCGATATCGTCAGGGATAGTCAC 7894 29 100.0 32 ............................. CCCTGTTTTATCCCTCAGCTTTTCTTCAACCA 7833 29 100.0 32 ............................. CATCGCGCCCACGAACGCGGCGCACCACGGCG 7772 29 100.0 32 ............................. GTAGACTTCCCGCATACAGTAATCAACCACGC 7711 29 100.0 32 ............................. CCACAATTGGCGCGCTCATTTAGCTCCCTGAA 7650 29 100.0 32 ............................. GCTTTAGAGGCCATTCTGTATGTGGCCTCTAA 7589 29 96.6 32 .C........................... CCGCCGTAACGGCTGATTATGGTCGAGTTCTG 7528 29 96.6 33 .C........................... AGAACACGTTCCCGATGGGCGGCGGCTACTTCC 7466 29 96.6 32 .C........................... GTGCTGGTTTATGTCAGACGGGATTTTGCTTA 7405 29 96.6 32 .C........................... TGGAGCCGGGGCCAGCGGACAGCGCTATTTAC 7344 29 96.6 32 .C........................... GCGTTTTACAACACCACTCTCGGCGAGCTGTG 7283 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 7222 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 7161 29 100.0 32 ............................. CGGAGTTGAATGGCGGGCATCTTTATCAGGAT 7100 29 100.0 32 ............................. CCATATCCCTCGACAATTTGCGGTATGACTTC 7039 29 100.0 32 ............................. CCCGTGCAAACGAGCATCGACGGTGGCGTGGT G [7018] 6977 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 6916 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCTCACAAGCGTCGCGAAAAAACGCCTCCAAAATCAATAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAACAAATGCCATTCAGTACAGAGGTTTACCGTTAGT # Right flank : CTCAGGCTCTTCGCGCCTGTCACTCGCCACCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19050-17801 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJU01000037.1 Cronobacter sakazakii strain cro663A2 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19049 29 96.6 32 ........T.................... TTTATCTAGCGAAAATGGCGGTGTATCTTTGC 18988 29 100.0 33 ............................. TGATTCATAAGCCTGGCGGCCCAGCTCTTTTAT 18926 29 96.6 32 ............................A TTAGGGAGATCGCTGTGGCTGGTAAATACACC 18865 29 100.0 32 ............................. GCGATGGGTTTGCTGACGAGCGGCACCTTTGG 18804 29 100.0 32 ............................. CGAGTTCACACACGCTACCTGGCGCGAAATTA 18743 29 100.0 32 ............................. TGATAACGCCTGTTTTTGCGACCAGGTCAGCT 18682 29 100.0 32 ............................. ATTGATGCCCGCTAACCCGGTGCGGGCGTACA 18621 29 100.0 32 ............................. CCAGTATCACCTTTCAATTTTACCCCTTCCAT 18560 29 100.0 32 ............................. CCCCTGACCTGCCAGTGCTTCCACTGTCGCCA 18499 29 96.6 32 ............................C ATCGATATCGACTATTTCCCTTTCAATCGCCA 18438 29 100.0 32 ............................. TGCCGCATTTGCGGTGCTGAAATGACAATTCA 18377 29 100.0 32 ............................. CATGGCTTGACCCTGATTTGAATACAAAAGAA 18316 29 100.0 32 ............................. CTTCAGATCGGCCAACGCGACACGTTTGATTA 18255 29 100.0 32 ............................. GATATATCAACTAGTTGAAATATATCGTTTTT 18194 29 96.6 32 ...........G................. GGGTTGTTAGTAATAAGGTGGTAACAGTGGTA 18133 29 96.6 32 ...........G................. GTGGTAACAGTGGTAACAGTGGTAACAACCAT 18072 29 93.1 32 ...........GG................ GATTCTGTCGGCGGGTGGCAGAACTCGCTGGA 18011 29 96.6 32 ...........G................. TATTCATCTTAACTCCTAAATTTTGTGAAAAA 17950 29 96.6 32 ...........G................. CGACACGATCCGCCGCCTGGGTTACGAAAGCG 17889 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 17829 29 89.7 0 ...........G.........G......A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 GTGTTCCCCGCACGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATGGTATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAATGCGATCCCCGGAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //