Array 1 15920-16659 **** Predicted by CRISPRDetect 2.4 *** >NZ_WASU01000021.1 Serratia marcescens strain 188J2 188J2_S71_R1_(paired)_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15920 28 100.0 32 ............................ ACGCCGCGCGCAGCATGTTCAGTGCAACTATC 15980 28 100.0 33 ............................ AGGCTGAAATTTTCTCGGTCACGTTCGACATGA 16041 28 100.0 32 ............................ ATACCGCCAGTGCGAAAAACGAAAGCGCTGGA 16101 28 100.0 32 ............................ TCCCCCAGGCGCGAGAACGAAAAGCGATCGTT 16161 28 100.0 32 ............................ ATGCTGTTCACTGACTGGCGCCAGCTACCATC 16221 28 100.0 32 ............................ CAACGCCGGATAACAAGGCGCTGGCCGGCAGT 16281 28 100.0 32 ............................ AGGACGGCTAACTGCGAGGCCTGGCTCTGGCC 16341 28 100.0 32 ............................ CTGGGACTCCCCGCGCAGGAACGCCATCACCG 16401 28 92.9 32 ................A...T....... TCATCGGCTTCATCCTGCAACCGTTTCAGCTT 16461 28 96.4 32 ..........A................. GCGCCTTAACCTGCTGCGCCTAGAAGAATCTC 16521 28 100.0 32 ............................ CATTTGGAGTGATGCTCTAGGAACTCCGTCAA 16581 28 82.1 23 ..G..T...T...A.....C........ GGTTTACTCAGTTTCTCATCGCT Deletion [16632] 16632 28 71.4 0 ...A.....T..T..A.T...C....GT | ========== ====== ====== ====== ============================ ================================= ================== 13 28 95.6 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGTGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAACGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGCACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAGCAAGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGCATTTGCCTGTTGTTCTTTAATAATCAGCTCATTAGTGATTTTTTTGTTCA # Right flank : ATGTGCACACCATCATAGTAGCGTAAGCGTAAACCCAGCGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 399933-396360 **** Predicted by CRISPRDetect 2.4 *** >NZ_WASU01000006.1 Serratia marcescens strain 188J2 188J2_S71_R1_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 399932 29 100.0 32 ............................. CAAATTACAGTTGCTACAGTAATTGCCGGGGA 399871 29 100.0 32 ............................. GAACTGCACTGCGGTGGTCTGCTGCTCGCCGC 399810 29 100.0 32 ............................. CAGACGCTTGAGCAGCAGTTAATCCAAATGCT 399749 29 100.0 32 ............................. GTCGCTCTGTCTACTGAGACGCTGAGCGCAAT 399688 29 100.0 33 ............................. GACATTGATTATCGCCGCTGGTTCGGGTCTAAC 399626 29 100.0 32 ............................. AACGTCGGAACAACCGAACCGAACTTGACCAA 399565 29 100.0 32 ............................. GCGGCTCTACCGGTGTGAACACCGTGCAGAAC 399504 29 100.0 32 ............................. GATGCAGACGGCAACACGATCACCGAGCAGCT 399443 29 100.0 32 ............................. CAGACAGCGCTGGCGATTATCGCCGCCATTGT 399382 29 100.0 32 ............................. TCCCGCATGAAACGCTGGCACGCAAGCAACAC 399321 29 100.0 32 ............................. ATTTTATCCTGGGGAAGGTTCCACCACTTCCT 399260 29 100.0 32 ............................. GCTCGTGACAAAATCTGTTTTAGCGCTGATAA 399199 29 100.0 32 ............................. TACAAAGTGGCGAGGTTCCCATGAGTTTTATC 399138 29 100.0 32 ............................. ATCTTTAGGGCATAGAGTAGGCATCATGCTAT 399077 29 100.0 32 ............................. CGTCGCCCGTGGTGGATTTTGCTCAGCACTCG 399016 29 100.0 32 ............................. GTCTACGTTAACCTTGTCCATTTCTTCTTTTG 398955 29 100.0 32 ............................. AACTGTTTGGTTGCGGCCCACAGCTCGCCGAT 398894 29 100.0 32 ............................. GGCTCTCGCCGATGTACATCAAGGCGCATGGA 398833 29 100.0 32 ............................. GCGCGCGAGAAGTGGAACGGCGTGCGGTTCAC 398772 29 100.0 32 ............................. GCTTCGCGACGCTGGCAACCAAGGGCTGGCGC 398711 29 100.0 32 ............................. TTGATGATCGACCGGTCACCGCCCGGCGGCCG 398650 29 100.0 32 ............................. TTGTAGCGATAGATACGAAGGTAGTGATCAGG 398589 29 100.0 32 ............................. CGTTATCAATATATCTTCAGAAACCCACTTAT 398528 29 100.0 32 ............................. CTTTACACGGTCGAGGAAGTGCGTGAGTGGTA 398467 29 100.0 32 ............................. AACTCTACCGAGATCGCGACCGTTAACCTCGA 398406 29 100.0 32 ............................. TCCACCGCCAGGCGCTGCGTATGCAGGCTATT 398345 29 100.0 32 ............................. GCACTTCGGTGCGATGTGCTATGGAAACCGGT 398284 29 100.0 32 ............................. GTTGGGCCGAGTATGTTGGCCGCATCAACGAC 398223 29 100.0 33 ............................. GCGATGATGGGATTATGCGGCTGTATGTACAGC 398161 29 100.0 32 ............................. GCAGGAGAGTTCCCGCAGCGCTTTGCTCTGAC 398100 29 100.0 33 ............................. AACAGATGGCGCAGGAACTTTTAACAGGCCTGC 398038 29 100.0 32 ............................. TTCACCGAGCTGTTCGAGGACAACATGATCGA 397977 29 100.0 32 ............................. TTGCCGAGGGTACTGAGCAATACGGAAAGCAT 397916 29 100.0 32 ............................. AGCATGTGATGAGATTGGCTTGTGCTCCATTT 397855 29 100.0 32 ............................. TGATCTCGACCGGCATGAACTTCGGCGACGGG 397794 29 100.0 32 ............................. GCATGGCAGGCATCTCGCGAACTCCTGGCTAA 397733 29 100.0 32 ............................. GAAGGCAAAGAAGGGTGAGTTTGATGTGAAAA 397672 29 100.0 32 ............................. ATATCGCAGGGACTCGCTCGGCCTCTGGAAGT 397611 29 100.0 33 ............................. CAATATTAACAGCGTCGCTGCGGGCATCGCTTT 397549 29 100.0 32 ............................. AAATCCAAACCCCCGGGCAGGAAAATCAGCGG 397488 29 100.0 32 ............................. CGCGAGGCGATAGACCGCACTCGGCTGGTCAC 397427 29 100.0 32 ............................. CGGTGCCGACCCACGCGCTGGGCGCGAGGTTG 397366 29 100.0 32 ............................. GCGTCATTAACCACGCTGCCGGCAGTGGGTGC 397305 29 100.0 32 ............................. CCCTGGAGCACAGCGACCTTAGCGGCCGGCTC 397244 29 96.6 32 .........A................... CAAATCTCGGACTTGGCCAAACTGGAGCGCAC 397183 29 100.0 32 ............................. GCTACGCGGCCAGCTCTATTACCTGCGCGGTC 397122 29 100.0 33 ............................. AAGCCTATGTCCGCCTTGTATCCCAGCGCCAGC 397060 29 100.0 32 ............................. AGTGATCAGGTCACATCCTATTCTGGTTGAAC 396999 29 100.0 33 ............................. GCCGTATTGATGTTAATCAGGTGCTTAGTTTGC 396937 29 100.0 32 ............................. AGGACTCTTATTGCCGCGAAGCCCTTTGGCAT 396876 29 100.0 32 ............................. GGGTTTCCGATCTGCTGCCTGATTCGGTGGCG 396815 29 100.0 32 ............................. GTTACCGATATCGCATTACAGATATAGACGGA 396754 29 100.0 32 ............................. TCTGCTTATCAGCCTACACTTGATATATTAAG 396693 29 100.0 32 ............................. GTCACGGATAACAGCCGTCATGTCGGTGTTGT 396632 29 96.6 32 ...........A................. CGCACCTGGACGCTATCGCCAAGCTCAATGTC 396571 29 100.0 32 ............................. AAATGGAGCATCACGGTCGGCCTGGTGCTCAC 396510 29 96.6 32 .............C............... CCGATAATGATGCGGTCGAGCGCCTGACGTTT 396449 29 89.7 32 ............TC.....A......... CAGCACGTCACCCGACGAGCTGGAGCAGGCGC 396388 29 69.0 0 ........T.T.TA.A......GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACTTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCCTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTCTAACTTGTTGATAATTAGTTTTAATTTGGTGGGAAAGGATTTCACCAAAGTGCTTTTTAAAATTTACTTATAAATCAAATGGTTGTATTTTCACGTAAGACGAGAATATTTGGTGGAATTTGAGGTCTTTAAAAATTCATTTTAATTCAACCATATATTCTAAGA # Right flank : TTGAGTGCTCGCAATCACATAGGCAGCATTTGAAATGCAGGGGGAAAAATCACGTAATGAAACCTATTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAATGTCAGTTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGGTGCTGTGCCAGTCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 403550-403337 **** Predicted by CRISPRDetect 2.4 *** >NZ_WASU01000006.1 Serratia marcescens strain 188J2 188J2_S71_R1_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 403549 29 96.6 32 .C........................... GCATTTGAGGAATTCAGATTGCGGACAAAACC 403488 29 100.0 32 ............................. CTTTAGCGCGGAAGATGGCGGAGAGGTTATTT 403427 29 100.0 32 ............................. GGTAACTGGGCCATCATTTGGGCGCTGTTCAT 403366 29 79.3 0 ...............A.T.......TGAC | C [403341] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTGATTGAGGAGGTTCTGGCCGCGGGGGGAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGTGATGCGGGCCACAGGAGTCGGAACTGATGGGAATGCTGGTTGTCGTGACGGAAAACATTCCTCCACGGCTGCGAGGCCGGTTGGCTGTGTGGCTATTGGAGGTGCGGGCCGGGGTCTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACCGCCTTAGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCAGGTTTTGATTTTCAAACATGGGGAGAAAACCGGCGTGAACCGGTAGATCTCGATGGGCTAAGGTTGGTCTCTTTCCTCCCTATTGAAAATCAGTAAGTTATCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGAGTCTTAAAAAGTTCTATTATAACAAATAGTTATGCCTA # Right flank : TTTTAGTGAACGGTATGTCAGAACAATCACTCATCAGTGGCTAAATACCGGCAGTACTTAAAAATAAAACGCTCTCATATCATCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGACGTGGTTGGTCAAGGCCAGCGGCTGCTCGCCGCGCTCGTTGGCGCGGAAGGCGTCGATCTGTGCCAGCGTCTCGGGGCCCTGCGGCGACAGTCGCACGATGTCCACCAGCCCCTGCATGCTTGGCAGCTCGTTGCCGAGGTTGTAGCAGTAACCGCTCATGGTCTGGATGCCGTTGAGTACGAACACCTGCTGCTGTTCCTGGGAGCGCATCATGCGACCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAATAGGCCAGCGGCAGATGGCCGTAGCTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 418666-416624 **** Predicted by CRISPRDetect 2.4 *** >NZ_WASU01000006.1 Serratia marcescens strain 188J2 188J2_S71_R1_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 418665 29 96.6 32 ............................A GCCGCGCGGGGTTTGCTTCACGCCGTAACGGG 418604 29 100.0 32 ............................. AAAGACGAGGCCACTGGCCCCGACCCACACCA 418543 29 100.0 32 ............................. TTGGAAATGACACGCGGGCCTGGAGTTTTGGA 418482 29 100.0 32 ............................. CGACAGATACGTGGCTTTACGGTACTGCTATC 418421 29 100.0 32 ............................. GTTTTACGTCAAATTATTTTTTGACTTATTCG 418360 29 100.0 32 ............................. TTTGTCAGCATCTTACAGGGCATGGGCGTTGA 418299 29 100.0 32 ............................. GCGACGCCCTACTGCAGCGATCCATGCCTGAA 418238 29 96.6 32 ............................T ACGGTCAGGTCTGAGATAGTGGCATTGGCCGC 418177 29 100.0 32 ............................. CTCTCCGCACTTAGGACAATCCTGATACTCGT 418116 29 100.0 32 ............................. AACTTTTGCCTCCATAGCGCACGAATAAAGAT 418055 29 100.0 32 ............................. GCTGTTAGCGAAATGCTAAAACTGGTTGAGCG 417994 29 100.0 32 ............................. CGTGCGCTTTCAGCAATTTTGGAACACGTAGA 417933 29 100.0 32 ............................. CATGTCGCCGTATTCATCGATCGCCTGGTCAA 417872 29 100.0 32 ............................. TTCCAGGTGTCGCTGAAAAAGGCCAGGTGGTG 417811 29 100.0 32 ............................. CGCCTATCTCCGATTGACTCAACTGAGCGACC 417750 29 100.0 32 ............................. AATTGATTGCCAATGCTGCATATGGGATGGCT 417689 29 100.0 32 ............................. GCATCAATCACTATCTGGCTGGCTCAGGCGTC 417628 29 100.0 32 ............................. CGCCTTGGCAACTCGCGCATTTCCAACCAGCG 417567 29 100.0 32 ............................. TAATCGACCACTTCGGAACCCAGCGAGCAGTT 417506 29 100.0 32 ............................. CTTGAACGAAGCGAATCTGCCGTAATTAGAGA 417445 29 100.0 32 ............................. CAATTACAGGCCATGTTATTTACCCTCCCGCA 417384 29 100.0 32 ............................. CACTCAGCAGGCGGCACCTGTTGAAGGCCAGC 417323 29 100.0 32 ............................. ACATGGAGTTTACCGACGACCTGCTGCTGACA 417262 29 100.0 32 ............................. TTTTTAGAGCGGGTGGCCTTTCTGGCTGAGGA 417201 29 100.0 32 ............................. GGACTAATTTCGGGCGCACGGACTTCCGAACA 417140 29 100.0 32 ............................. GCTTTCGCAGAAACCTTTATTCTCTGAAATGG 417079 29 100.0 32 ............................. CCTTTCGGAGCCAGCAATTCATCCAGCGATGG 417018 29 100.0 32 ............................. TACAACGGCGGCGGCAATGAGGCCGACCTCAA 416957 29 100.0 32 ............................. ACCATGACGAAAATCAAACTGTCGTCAGGCAG 416896 29 100.0 32 ............................. ATGGCCAGATCCAAATTCAACGCGGCTTGATG 416835 29 100.0 32 ............................. TAGCCGGTTAGCGCCCGGCGAACGCATCAGCA 416774 29 100.0 32 ............................. CAGCCGATTGGCTGCTTTCAGGTGACGCGTTT 416713 29 100.0 32 ............................. GCCAAAGATGCCGAGGGCATGAAACGTAAAGA 416652 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACGACGCCGGTCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAAGTGTGGGGCGACGTGGTGATGATGCTGATACTCGGCGTGGTCTACACCCTACTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAACGGCGGGCGTAGTGGATATATGTTATTGTTTTAAAATAAGAACCTGGTGGTTTGGTTTTATTGTAATGAATGATTTTTTTATTTCATAAATTTCAAATGGTTATATAGTCTTCCGGATGCTTAAATCGCGGTGAAATTTTGTAATGTTTAAAAGTATATTTAATTCAATTAGATATATTGAGA # Right flank : CATGTTCGCGATTTCTGGTTGCGGGGAATGGCGAAAGGTTCGTTCGGAACGGCGTGCATTGCCGCAAACAATGGGAATGCCGGAGTACCCGGATTGTCAGGTGCCACGGGATCTCACCCGAGAGGGGGGCTGCGCGGGCTTGAGAAGCCCTGCATCAGTACATCTATGAAGTGGGGGCTTGAGGATTATTAAAGATATGGTATTGTATAATAACCGTGATAATCAGCAGGAGGTCAATCCATGAACGTCGTTCACGACCATCCAGGGGTCTCTACTCTTGTTGGAACCCCAAAAGAAATACAGGACAAGCTCCGGAAGTCGCATGCCGACAAGGTGATGGTGCTCACTTTCGAGCACATGAATGCCCATGTGCTGAAGACCTTGGCCGAGAACATGTCAAACGTTGCCTCGTCGATGTTCGAAGTGCTGCTGACACGGCAGGATCGCGAAGTCGTAGAGCTTCTGGCTGACGCGCTCGTTCCGCGAAAGCCGGCTTCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //