Array 1 154235-155239 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTNS01000005.1 Escherichia coli strain 10432wA4 NODE_5_length_220239_cov_43.9308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154235 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 154296 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 154357 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 154418 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 154479 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 154540 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 154601 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 154662 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 154723 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 154784 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 154845 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 154906 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 154967 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 155028 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 155089 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 155150 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 155211 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180978-181982 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTNS01000005.1 Escherichia coli strain 10432wA4 NODE_5_length_220239_cov_43.9308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180978 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 181039 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 181100 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 181161 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 181222 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 181283 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 181344 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 181405 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 181466 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 181527 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 181588 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 181649 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 181710 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 181771 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 181832 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 181893 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 181954 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTGTGTTCCCCGCGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //