Array 1 208056-210270 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYB01000005.1 Listeria seeligeri strain Ls13-004 Listeria_seeligeri_Ls13_004_Contig05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 208056 36 100.0 31 .................................... AGAGGATGCTATTATTTGCCCTGATGCAGTA 208123 36 100.0 30 .................................... GTACATTCAAAAAGCAGCTGATTGGTTTAA 208189 36 100.0 30 .................................... CAATTGGTTTGTTGAAATGCGAGAAACATA 208255 36 100.0 30 .................................... CCATGCGTTTTTTCATGTCCTTTTCTTCTT 208321 36 100.0 30 .................................... TCTATAAATCAGTCTATCAGCAGATTAAAT 208387 36 100.0 30 .................................... TGAAAAATCGTTGGCACTCCGTCGAACTGT 208453 36 100.0 30 .................................... AAAGAAATGCTTTCTATGATAGAGACTCTG 208519 36 100.0 30 .................................... AATGTGGTTTGTAATTATTGGTGCCAGCTT 208585 36 100.0 30 .................................... TTGAATATTTCTTTTTTGCCCTGCTGCTAA 208651 36 100.0 30 .................................... ACTGTTTTTCAGCGCTTTTTCAGGAGTTGA 208717 36 100.0 30 .................................... TTAATTATTTAGTTGAGCAACCTAAAAAGC 208783 36 100.0 30 .................................... TTTTATAACTGCTCCAATTACAGGACTGGT 208849 36 100.0 30 .................................... TTATCCAGAAACGCATGCGCAAGGTATTGT 208915 36 100.0 30 .................................... ATGATGCCAGAGCTAAAACAATCCTAGGTG 208981 36 100.0 30 .................................... TACTCCTAGTGTCCACAATGGTTTCCAAAA 209047 36 100.0 30 .................................... TCGGTGGTGTGAAAGTAGCACAGCAACTGA 209113 36 100.0 30 .................................... TACAGTCATTCAATTTGCGCGTTGCTGGTA 209179 36 100.0 30 .................................... CTCTGAATTCTAACGAGTCGAAATCTACAG 209245 36 100.0 30 .................................... CTATCTATATTAGAGTATCTACACAAGAGC 209311 36 100.0 30 .................................... GCGGCAGGTTTTGCGAACGGAATTAGAAGC 209377 36 100.0 30 .................................... TATTGCTTTCGGACATAATTCAAAGCGTCA 209443 36 100.0 30 .................................... CAGTTAACAAATACACTAACGAGATTGTGA 209509 36 100.0 30 .................................... TGTAATCTTTGTTTGCTTCTTTAGCAGAAA 209575 36 97.2 30 ........A........................... GAATTAAGTTCGATTACATGCTAGCGACAA 209641 36 100.0 30 .................................... ATGCTCTAATTTTCTTGTGACGCGTCTCTA 209707 36 100.0 30 .................................... ATGATATAGTACAATTATCAATCTACAGTG 209773 36 100.0 30 .................................... AATTTTAAAATCAGCTAAATCCGAATTCTT 209839 36 100.0 30 .................................... TTTAAATCACGCTAAATTTTCGCCGGACTT 209905 36 100.0 30 .................................... GATATGTCGGTCTAAGTCTCTAAAAAATCC 209971 36 100.0 30 .................................... TTCTCTTCAAACCACTTCGCCACAAATCCC 210037 36 100.0 30 .................................... TCTCCTTCAAACCACTTCGCCACAAATCCC 210103 36 100.0 30 .................................... ACAAACCGTTTGAAAACGTTTGTGCGTTCA 210169 36 100.0 30 .................................... TGGTAAATTACCTGAAACAATAACCTTCAA 210235 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGCGAGGATGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGCGCAGTAATGGCAAAGCATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCCAAAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 217154-217835 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYB01000001.1 Listeria seeligeri strain Ls13-004 Listeria_seeligeri_Ls13_004_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 217154 29 100.0 37 ............................. TCACAAACCACAATCCGCCGACTTCCATCACAGTGTA 217220 29 100.0 36 ............................. ACGTTAGTGCTATATGATGAGGAGGATATCGAAATC 217285 29 100.0 35 ............................. CAATTTCCAAATCAGTTAGTTTTTTGCTTAATTCT 217349 29 100.0 35 ............................. TTTTACCTACGTAACTTTCTGTTTGTAATCCCATC 217413 29 100.0 34 ............................. TTCAATTAAAACTGGTATAAACTCTTTGATTTTT 217476 29 100.0 36 ............................. CTATCCCGGGAATTCTGTATAGATCTGGATAAATAA 217541 29 100.0 40 ............................. CATCTTATGTTACGATTCAAGTGTTTTTATGTTACAGTTG 217610 29 100.0 40 ............................. CAAAACGATAAAGCTTTTGGTTTCCAAGTGCATCAGAATA 217679 29 100.0 36 ............................. CGGATAAAGTGTTGGTATGATTAGCCTCACACGCCC 217744 29 100.0 34 ............................. TTTTTTTCAGATATATGCAACAAATGAATTTCTC 217807 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTAAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 241604-249088 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYB01000001.1 Listeria seeligeri strain Ls13-004 Listeria_seeligeri_Ls13_004_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 241604 36 100.0 30 .................................... GTATTCGTTGGTGAAATGTCTGCTAACGTA 241670 36 100.0 30 .................................... CAATCTCTTTCGAGTTCTTCAACAGTTAGC 241736 36 100.0 30 .................................... CCTATATTCATTCGCTATTATCCTCCACAA 241802 36 100.0 30 .................................... TACAGAGCTGTTTACAAATTTACCTACACC 241868 36 100.0 29 .................................... AACCAAATTTGGGGATAACCCAATACTAC 241933 36 100.0 30 .................................... TATTATATCACTATGGGACGGAATAAGCAA 241999 36 100.0 30 .................................... GTAGCATACCTCCACTAGTGAAAGATAGAG 242065 36 100.0 30 .................................... ATAACCTTATAAACACCTGTTTCTAACTCG 242131 36 100.0 30 .................................... AATAATGGTGAATGGTTACTGATAACTACC 242197 36 100.0 30 .................................... TTGGAGCATAGGGACTATGCTAACGGAGTA 242263 36 100.0 30 .................................... AGGGTATGAGCCACACCAAGTCGCACTTGG 242329 36 100.0 30 .................................... TTTTGTTTATACATAACTATATACTAATAT 242395 36 100.0 30 .................................... AAGCGAACAAGTTCGTGTACATCATTTCAA 242461 36 100.0 30 .................................... AGGAAAGTATGGACAAGATGATGTTAAATT 242527 36 100.0 30 .................................... CCCCCTTACTTTATCCAATGTAGCTTGTGG 242593 36 100.0 30 .................................... CTATTAGGCTGATTAAAGCTATTAACTCGC 242659 36 100.0 30 .................................... TTTAGCTGTAGACTATGCAATATCCACCGT 242725 36 100.0 30 .................................... AACGCTTTGTTGTTACGCAAATTGAAGAAG 242791 36 100.0 30 .................................... CTCCGTCTGCAACCACATAGCGGACGTTAA 242857 36 100.0 30 .................................... GTAAAACATATACTACTGCACCATCTTTGC 242923 36 100.0 30 .................................... GCAAAGTATTAGCTAGTTGCTTACCAACTT 242989 36 100.0 30 .................................... TACTGACCAATTGCGTTTTAATGCGTCTGC 243055 36 100.0 30 .................................... TGATAGTAGATATTTTCAACTCCTCGAAAG 243121 36 100.0 30 .................................... TTATTTAATCTTAGCCACAATCATATCTTA 243187 36 100.0 30 .................................... TGAAGGTGCGGCTTGGCCAGCGGCGAGCAC 243253 36 100.0 30 .................................... TTTTCGGACGTGAACCTTTATCAGCTGTTA 243319 36 100.0 30 .................................... TAAACCCCTGAATAATGCCCGCTACGGTCT 243385 36 100.0 30 .................................... AAGAAACAAAGAAGAATATCATCGCAGATT 243451 36 100.0 30 .................................... CCAATAAACTCACCATATTTCTTGATGTGT 243517 36 100.0 29 .................................... TAATACTTCTCTTTCCAATTGCATAATAA 243582 36 100.0 30 .................................... AAAATGTAAGGCTCTCCCTCTTCCAGTCCT 243648 36 100.0 30 .................................... TTCGTTGAAGCAAGACTGTTTAAAGACAAC 243714 36 100.0 30 .................................... TGTCGTCTTCTATACTAATGTAGTCCACCA 243780 36 100.0 30 .................................... CGTGATTATGTAACCTATGCGCACTTTGGT 243846 36 100.0 30 .................................... CGGTTGTGAGATTGACTGCTTATCCCCTTC 243912 36 100.0 30 .................................... TTCATCACGTTTCATGCTAGCACGATTTTG 243978 36 100.0 30 .................................... TCTTACATCAGCTTGCAACGTTTTCGGAGG 244044 36 100.0 30 .................................... AGATAGTCGCCCTCATCAAACAGCAACAAT 244110 36 100.0 30 .................................... TTGTCTGCCATTCGTATTGTTTGATGCGGA 244176 36 100.0 29 .................................... ATTTAAATTGTATGGGAGCGCAGTCACAT 244241 36 100.0 30 .................................... AGTACATTATCTAATTATTTTATAAGCCCG 244307 36 100.0 30 .................................... AAGAACAGAGTGAAATTTTGACTGTCAACT 244373 36 100.0 30 .................................... TGATTCGATTATATCCTTCCATCATCAATC 244439 36 100.0 30 .................................... CGGCATCGGGATTGGTATCATGTGTGGCGA 244505 36 100.0 30 .................................... GCATTTCGTCGTTCTCGTCGCTTATATTCT 244571 36 100.0 30 .................................... ATTTGGACGAGAAAACTTGCCGCAATTAGT 244637 36 100.0 30 .................................... AGTAAATAAAAAAGGAGTCGCTAAACATGA 244703 36 100.0 30 .................................... GAGTATTGATGATTATACCTTGACATTCAA 244769 36 100.0 30 .................................... AATCGCGGGATTATCTGATAGTGATAGATA 244835 36 100.0 30 .................................... ACATTTTTCTTGGCTGTAAATCCGAGCGCT 244901 36 100.0 30 .................................... ATTTACCTTTGTGCCGAACACCTAGAATTC 244967 36 100.0 30 .................................... TTTTTTTCTTGAGAATACTCAAATTCCCAC 245033 36 100.0 30 .................................... ATTGCATTTGTTGATAATTTGCCATGGAAG 245099 36 100.0 30 .................................... ATTTTTAAGTCCCTCCCGTTTCTTTACTAT 245165 36 100.0 30 .................................... CGAGGTCCAAACAACGAAAACCGCGATGGC 245231 36 100.0 30 .................................... AGATGAAAATACTAAAACAATCGTCGGGGT 245297 36 100.0 30 .................................... AGTTGTCATTAACAGCGGTGGCGGTGATGT 245363 36 100.0 31 .................................... TTTATGCTTGTCTGGGTCATGATAATCAGTA 245430 36 100.0 30 .................................... TTTCAGCTTGCATGAGACTGAAAAAGTTAG 245496 36 100.0 30 .................................... TCGGGGTATTTTTTTGAAATTAATTTATAA 245562 36 100.0 30 .................................... CAGGCATACGATATGCAGAAGCATTAGCAC 245628 36 100.0 30 .................................... TTTATGATGAGTCTGTCATTGACACATTAG 245694 36 100.0 30 .................................... TAAAACCTGATTGTGTAGTCTTACTCAGCG 245760 36 100.0 30 .................................... CGGAGTTCGGAAATACGATTTCGGAAGTGT 245826 36 100.0 29 .................................... ATTTTAAGAACTTAGTACGCAAACCAGTA 245891 36 100.0 30 .................................... CGCGACACTTGTATAAGGACGAATTCGAGT 245957 36 100.0 30 .................................... AAGCTCTTTCAGATATTCTTAGTGACCTGG 246023 36 100.0 30 .................................... CTCCGTCTGCAACCACATAGCGGACGTTAA 246089 36 100.0 30 .................................... TTTAGAGTTAAACACCTGCCATTCCACGTT 246155 36 100.0 30 .................................... ACAATCGCCTGTTTCTAGATTTAGATTGAT 246221 36 100.0 30 .................................... AGAAGAACTGAAAACACAACCGAACGACGG 246287 36 100.0 30 .................................... TAATTAATGGCTTTGAAAAAACAGTATATT 246353 36 100.0 30 .................................... TGCAATTTTTGCTCCTTTTTCATCAACAAG 246419 36 100.0 30 .................................... CTTGTGATGCTTTCTAAAACTGTTGAGCCG 246485 36 100.0 30 .................................... GATATTTAGATTGTAAGGCAGCGCAGTTAC 246551 36 100.0 30 .................................... TTCGCAATTTGACACTGGTTATCTTACAGG 246617 36 100.0 30 .................................... CAGAAGAGGAGAGTCAATCGGATGACACCT 246683 36 100.0 29 .................................... TATTTTTTCATACCAGTTGATCACCTAGA 246748 36 100.0 30 .................................... CCTCAATGAGTATGACATGATGTACGACTT 246814 36 100.0 30 .................................... TTGATTGCACTGCACCTTTAGCACCGGCTA 246880 36 100.0 30 .................................... TGGTATTTGTTTCATTCCGCCACCTCCAAC 246946 36 100.0 30 .................................... TTTATTCACTTTGCTTAAGTCATCTTCTGT 247012 36 100.0 29 .................................... AAACTCGGAATTACGAAGGGGACGACGGC 247077 36 100.0 30 .................................... AATCTACTGTTTTGTTATTATATTGCACTA 247143 36 100.0 30 .................................... TTATTTTATTGCAATATGTCAAAGAGTTCT 247209 36 100.0 30 .................................... TTTTAAAAATCTGTAGAACGTTGCCCTCTA 247275 36 100.0 30 .................................... CGCATTTTCTCGTAAAGAATCATCTAATTT 247341 36 100.0 29 .................................... TGTATTCTGATACATAGTTTTTAGCAACT 247406 36 100.0 30 .................................... AAGGGAATTGATTTTGGAGCACCGACAGGA 247472 36 100.0 30 .................................... TCTATATTCCAGGAACCTACGCAGAAGCAC 247538 36 100.0 30 .................................... TCTAACGGAGACACAATAAATCCACCAGCG 247604 36 100.0 30 .................................... TGGGGAGGTTGTAAAAAAATGTCAACTCGG 247670 36 100.0 30 .................................... TTGATTCTCCGTATTATTTTCGAGCCAACT 247736 36 100.0 30 .................................... GGATTTTGGCAAGAGGGCGATTTTAGTCGA 247802 36 100.0 30 .................................... AGAAGCCATCGCTGAATTGGAAGCCTATGA 247868 36 100.0 29 .................................... AATGAGAAACTTGAAAACTTTGATGACAC 247933 36 100.0 30 .................................... CTAAATCGACAATTTCCGGTCTCTCTCCGA 247999 36 100.0 30 .................................... CTAAATCGACAATTTCCGGTCTCTCTCCGA 248065 36 100.0 30 .................................... TTACAAGCTGATGGACAGCTTGATGAACAT 248131 36 100.0 29 .................................... GTAAGCGTTTTGGGTGTTTTGTCGATAGT 248196 36 100.0 30 .................................... ATTTATGGCAGATGTAGTTTTACCAGAAGT 248262 36 100.0 30 .................................... TTTAGAAGTAAAAGACTTGGTTAGAGAGGG 248328 36 100.0 30 .................................... TCCGCTTACATTCGACTCGCTTTATAGAGT 248394 36 100.0 29 .................................... TTGAAGTAAGAAATAGTTTATACAATAAT 248459 36 100.0 30 .................................... TGTGACATTCAAACTTGTTGATGTTGCTAG 248525 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 248591 36 100.0 30 .................................... TTAAATCGACGTTGTTTTCTATAGCGTCCA 248657 36 100.0 30 .................................... CATTCATTCGCTCATCTTCAACGCTGTTAT 248723 36 100.0 30 .................................... ATAGGCACCTGTTTTTAGGTTGAGATTGAT 248789 36 100.0 30 .................................... GACAGAAGACAGAGAGAAATGGACAGCGGA 248855 36 100.0 30 .................................... TGACTATGGAATTGATACACCCAGCATCGC 248921 36 100.0 30 .................................... TTAAAAGAAAAGCCAATTTGGAAAAGCTCT 248987 36 100.0 30 .................................... ATATATGTGCATCTGCAATTGGTATGGCCG 249053 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== =============================== ================== 114 36 100.0 30 ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Left flank : TAATCTGTATGCAAAAGAATTATTTAATAAGCAAGTTTTATTTTTTATAGAAATGCCAGAAAAAACTATAATTTCAGAAGTGGGAATAAAGAAATTTCAATTACATGTTGAAAAAATGTTAACAAGAGGAATCAATGTATTTATCATTTCTGAGCATATTTGGATGGATGGTGCAATTAACCATTTTTATTTTAGTGATATTGTTAATGAATTACAAATTATGGTTAAAAAAGAACAAATTATTGCAAAGATACCTTTAATCGTAGAAGAATCGGATTGGATAAAAGCAATAAATTGGTCTATGTTAGCTGTGGATAACTATGGTGGAAAAACGGTCGAATTAAAGTTAGAAGCTGTGGATAACTTAGTTGTATTTGTATTAGTTTATTTTATTTTCATTTATAATGGATGGCGAATTATCGTTGACTACAAAGGAATTCCTGCAAATATTATTGTTTACCTTGATAGGTTGATTTAGGTTGAGGTATAATGGAAAAGAC # Right flank : TTTCAACACTTAACAAAAATGATGTTAGGTGACTGATGAAAATATGTAAATGTATTTTTATTTCGATGACGAGTTGAAACCATTACCGGGTCTCTATTTGAAAAAGTTGGTGGCACGTGAACAAGTCGAAACGGAAGCTGCGTTAGGACCAGTTCAAGCACTAGAAAAGTTGGTGAAAATGGTCGGGAAAGTGGACCCAGAAGACTTAGCAATTGGGATTGGGATTGGCGCTCCTGGACCGCTTGATGTGACGAAAGGTATTTTTTTAGATGCTCCAAATTTACCTGGGTGGTACGGTTTTTCGATTCGAGATGAACTTGCGAGTCGTGTAGGTATGCCTGTTTCTTTGATAAATGATGCCAAAGCTGCCTCACTTGCTGAAGCGAGAATTGGCGCGGGACAAGGCTATGACAGTGTACAATATATTACCGTAAGTACAGGTATTGGCGGTGGATTCATTTGCGGTGGTGAACTGTTTTCTGGCAATCACGGGCATGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //