Array 1 177665-180684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWF010000023.1 Erwinia amylovora strain Ea03-03 Ea_03-03_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177665 29 100.0 32 ............................. GATGTTTTCCCATAGAGTTCTGAGGAAGACAT 177726 29 100.0 32 ............................. CCACCCCACATTGTGGCGCATGTGGGCGCAAA 177787 29 100.0 32 ............................. GTGACATTCCGCATGGCGCGTGATGCCATCAG 177848 29 100.0 32 ............................. AATCTCGCCAAAGAGCTTGGTTGCGTTGTAGT 177909 29 100.0 32 ............................. AAACTTATCTTGTTGAGCAGCATTGCCGTTCG 177970 29 100.0 32 ............................. TCGTGCACTGCGCGTAAAGCTCCTTTAGCGGC 178031 29 100.0 32 ............................. CAATGGAACGCTACGGCATTCAGAAGCTTAAC 178092 29 100.0 32 ............................. TTGTCTTTGATTCCCGGCAGCATGCAATTGAT 178153 29 100.0 32 ............................. TAAAAAAACGACCCAGAAAACCCTCTGTTTGT 178214 29 100.0 32 ............................. GGGGTTGCATGAGCAAACTTACTGACAATCTG 178275 29 100.0 32 ............................. ACAACGTTTCAGGCTGCATTAACTTCATTTTG 178336 29 100.0 32 ............................. CTCCAGCCTTACATTTTGCCAACCCTTTAGCA 178397 29 100.0 32 ............................. GTAAACCGTGATTTAGAGGGTTTCCTGATTGT 178458 29 100.0 32 ............................. CCGATAATGAAATAATTTATGCCGATGTTAAC 178519 29 100.0 32 ............................. CTGCAGCCGCCCACTAAAACGGGGATCAGCAT 178580 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 178641 29 100.0 32 ............................. AGAATCCCACGATGGACTCGGACAGGCCCGCA 178702 29 100.0 33 ............................. CCGATGCCCTATGGTCACCCAAAAATAGACGGT 178764 29 100.0 32 ............................. ACGCGGGTTACAGTGACCTCGGCGCAGCAATG 178825 29 100.0 32 ............................. TGGTTGGGCGATGTGAATGGACGTTTGAGCCG 178886 29 100.0 32 ............................. CAATTGATCGGCTATCAGGCAGAGATCGCCAG 178947 29 100.0 32 ............................. TTAGCGCCCTTCTAAGCCGTAGGTCACAGGTT 179008 29 100.0 32 ............................. TCGACCCCGCCTCTAACGCCCCGCCAGATTTT 179069 29 100.0 32 ............................. GCCAACGGAAAATGTTGCTACTCGATCTTTGT 179130 29 100.0 32 ............................. ACAATCCATCTGGTACCGCGGCTAATGCCCAA 179191 29 100.0 32 ............................. GAGTGGTGCACGAGCCGCCGCAGTCCTTGCTT 179252 29 100.0 32 ............................. ACGCCATGCATCGCGTTTATTTCAACGTCCGC 179313 29 100.0 32 ............................. CCGCTCAATCAGCGGCGGGGATCGTCACGATA 179374 29 100.0 32 ............................. TTGTCAGTTGCAAACATCAACAGCTCAATTAC 179435 29 100.0 32 ............................. TCCACCAAGAGGAAATTAGAGCTATCCAAGAT 179496 29 100.0 33 ............................. CGGTCAATTTTCCTGCTCAATGTCAGTTTTCAA 179558 29 100.0 32 ............................. GTATCGCTGCGCAGTGACCAGTTGTGCTTTTT 179619 29 100.0 32 ............................. GCTGAAATCAATAACATCTCCTGGATTTACAG 179680 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACTGGGCTG 179741 29 100.0 32 ............................. CTTTGCCAGGCCTGTGTTTGCCCTGGGAATTT 179802 29 100.0 32 ............................. GAACCATAGAGCCGGGAGATCTAATTTTCGTA 179863 29 100.0 32 ............................. TCATCGCGCCGGTAATTCGTCATCTCATGAGG 179924 29 100.0 32 ............................. AATTGAGCTTTCAACGATTGCAGTCCCCGCGA 179985 29 100.0 32 ............................. TTCACAGACTGCTTTCTGCTTGCGGCTATATT 180046 29 100.0 32 ............................. CATCCATCGGCAGTTGCGGCTGATATATTTGA 180107 29 100.0 32 ............................. CGCTACTGTGTGGTCTCATACCCTCACCAACA 180168 29 100.0 32 ............................. TATGTCCCTATGGGATGTGTTGCTTCGGATTC 180229 29 100.0 32 ............................. GGATGAAATTTGATGCCTGGGTGAAAATGATA 180290 29 100.0 32 ............................. CCTGCGTGAGTCAGCGAGTCAAAAGGGGCTTT 180351 29 100.0 32 ............................. GTTCCCGGCGCTTCGCCACTCTGCCACCACTC 180412 29 100.0 32 ............................. TCGGCTATGCCGTGGGGTGAATGATGGAATTT 180473 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGA 180534 29 100.0 32 ............................. TCCAGAAGGGCATAACCTGCATTAACCCGCGA 180595 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 180656 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210449-212673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWF010000023.1 Erwinia amylovora strain Ea03-03 Ea_03-03_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210449 29 100.0 32 ............................. GGCGGGGTATCTGCGGCGTGCCGAGAATGTAA 210510 29 100.0 32 ............................. ATTGCCAGCCCACTCACCAAGAAGCCTGCCTT 210571 29 100.0 32 ............................. TAACCGCCTGCGGGCAGGCCCCGTTTCGTTTC 210632 29 100.0 32 ............................. GTCATATTCAAGGCGAAGTGATGTCGGCCAGT 210693 29 100.0 32 ............................. GATCTCGACTGATTGCATACCCTGACGGCGGC 210754 29 100.0 33 ............................. AAAACTGCCCGCTTGTTGGACCTACACGGAACC 210816 29 100.0 33 ............................. CCAGAAAATGAAAGGGCAGCAACGGCGCAGGAG 210878 29 100.0 32 ............................. TAGGTTAGGTGGGGGAGGGGGTTATACAATCA 210939 29 100.0 32 ............................. AATTAATGCGGATCGATTTTATTAGTTCATCT 211000 29 100.0 32 ............................. CTAATCCTGTTCGAAATTATCAACACACGGTA 211061 29 100.0 32 ............................. TGGTCATCGAGGATGGTTTATTACTCGCAAGA 211122 29 100.0 32 ............................. CTCGAGTCCGGCAAACTCCAGCAGTTCGCGGA 211183 29 100.0 32 ............................. TCATTACCCGCACAGCCAGATAGGGCAAAGAA 211244 29 100.0 32 ............................. CCCGAGCACGCGCCAGTAATTTATATTACGGA 211305 29 100.0 32 ............................. ATGATTGCAACAATGAAAGACAAAGACGAAAG 211366 29 100.0 32 ............................. CAACAAGCGCAGTGATTGCCTGTGAGTCGAGA 211427 29 100.0 32 ............................. CCATCGCCTGAAAAGTACGATGTTATCGATCA 211488 29 100.0 32 ............................. GATTCAATAAATGTTCGTATATTCCAAATCAA 211549 29 100.0 32 ............................. ATCGTCTGCTAGTTATCAGTGACAATCAAAAC 211610 29 100.0 32 ............................. GCAATAATACCCGGTAGGTGTGGGGTGATGGT 211671 29 100.0 32 ............................. TCTTTGATGAAATGCTCCGGGGGCATCTGCCC 211732 29 100.0 32 ............................. CATCTGAATTTAGTTACAGCATTCAAAATACG 211793 29 100.0 32 ............................. AAATGGCTAACGCTTTGCGTCAGTTTGGGCAA 211854 29 100.0 32 ............................. GCCGCCGACAACGCTGTTAAGGATGGTCGTAC 211915 29 100.0 32 ............................. GAGATAAACAGATTTGGTTTCTTGCTCTTTGG 211976 29 100.0 32 ............................. CCTGGGGCTGGCATTGCGGTCATACAATAACA 212037 29 100.0 32 ............................. CTGCATAGAGGCCACCCACCACGGCTCGGCAA 212098 29 100.0 32 ............................. TGAGCCGTGACGATGGAGAAACAGACGTTTTT 212159 29 100.0 32 ............................. GACGTTTCTGGAACCTGTTCCGCACAAAGACG 212220 29 100.0 32 ............................. GTGGGTGGGGCAGAGTTTGCGAGCATATCTCC 212281 29 100.0 32 ............................. GAACCTGCTTGCGGTCAAATACACGCTTCCAG 212342 29 100.0 32 ............................. CCGTGCGAATGCTGTAACGGCGAGGGATTCAT 212403 29 100.0 32 ............................. TCAAAAATCTCGAATTGCTCGGTAAACACGTT 212464 29 100.0 32 ............................. GTGCTGATGGAAACCATCGAGAAGGCCGGGGC 212525 29 96.6 32 ................A............ GATATTACGTGTACGCACAGCCGCTGGCCAGT 212586 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 212646 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.3 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //