Array 1 159-2076 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR733555.1 Burkholderia sp. 8Y isolate Burkholderia sp. 8Y, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159 28 100.0 33 ............................ TTCAAAAAGGGGGCGACGAATTGAAGCCGTGCC 220 28 100.0 33 ............................ CGCGCGAACGAGTAGGCCGTACGGCGTCAGACG 281 28 100.0 33 ............................ CGGCCCGCACGGTAGTTCCATCCTCTTTCGTGA 342 28 100.0 33 ............................ GTTTCGGCGCGGGCGAAAGGCGCGGCGGTGTTA 403 28 100.0 33 ............................ CGAGAGTCGAGTTGATCGTCGGAGAGGTTGGCG 464 28 100.0 33 ............................ CGACAAGGCGTCGTCGAGCTCGCGACAGCCGAC 525 28 100.0 33 ............................ CTCCATTTCGTCGCGCAGCCCTTGCGGGAGCCA 586 28 100.0 33 ............................ CGAGCCTGACAGGTCGCGCCGGTCGATCTCTTC 647 28 100.0 33 ............................ CGATTTGCAGTCGGGGAGTTCGATTCTGGACTA 708 28 100.0 33 ............................ CACGGCGGCATGTGTAGAGCGCATCAGCATGTC 769 28 100.0 33 ............................ TTGCGGGTATCAGTTATAAACCAGTGTCCGGTT 830 28 100.0 33 ............................ CATCACCAACGGCGATGCCGGTTCGGGTGGTTC 891 28 100.0 33 ............................ CGAGTGGTTCAAGCAAGCGAAGCAGCAGATTTA 952 28 100.0 33 ............................ GCAATTTGCATTTGAGGCTCGCCTGGAACCCCA 1013 28 100.0 33 ............................ GTCACAAATGAAAAAGCCCGCGAGCGCAGAGCG 1074 28 100.0 33 ............................ CCACTTCATCGAAATCGGGGAGCGCGGTCTTGG 1135 28 100.0 33 ............................ GCAGCTGCTGATTGAGAGCGAAGGCACGACAAT 1196 28 96.4 33 ....T....................... TTGTAGGTGGGCTACGAAGGCGCAACAGACGCG 1257 28 100.0 33 ............................ GCTGAAAGCCGCCTATGACGCACGCAAGGCTGA 1318 28 100.0 33 ............................ CTGTGGGCCGAACAGCGCCCGCAGGTGAGTCTG 1379 28 96.4 33 .................A.......... CCTGACACCGGACGGGCGCGCAAACGTCGCTTT 1440 28 96.4 33 ..............G............. CAGCGGGCGCGACACGGTTAAAAGCCCGATGGG 1501 28 100.0 33 ............................ CTCCGCTGGGTCGCTTATCGGCAATATTTCCAC 1562 28 100.0 33 ............................ GTGCAGCGTCTCTGCCGCGTCATGTGCTTGCAT 1623 28 100.0 33 ............................ CGAGGGGGCGCTCCTGCGCGGCACGCTCAACGG 1684 28 96.4 33 ............T............... CTACGATGCGACGAATCAGGCATATGGCGACCT 1745 28 96.4 33 ............T............... GCCGACACGCCACGCGATCATGCCCATGACCGC 1806 28 89.3 33 .......T....T...A........... CTGCACCTGTCGGGAGACGGGACATTACCCGGC 1867 28 92.9 33 ..............G............T CCGATCGTTGGCGATGTCGAAACGGCCGAAGTC 1928 28 82.1 33 ..C........AT........C..T... GTTTTTGCCGCTTGCTTTATCGCATTCCTGCTT 1989 28 89.3 33 ...........A............AC.. CAATCCGGGCACCTGCGCAGCGGTAACGATTCA 2050 27 78.6 0 .T.........A......C..CC.-... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.3 33 GGTTCCTCCGCGCACGCGGAGATAGGCC # Left flank : GGCCATGGCGTAAGCCCTCCCGAGGGCAGGTTGACGAACTCGACATTCATCAACTTACACCACGGCCACCCCTTCCTTCGGCATCTTCCTGCCTCCGAACTTTCTGCACACTTCTCGGCACATTACCTGGATTTGGAGGGGCCGACCGAGGCTAGGAAG # Right flank : TCCACCCCCCCATGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGCACGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2250970-2251298 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR733519.1 Burkholderia sp. 8Y isolate Burkholderia sp. 8Y, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2250970 28 100.0 32 ............................ GAACAGATGCGCGCGATCGCGGGCAACGGACG 2251030 28 100.0 32 ............................ GAAGGGCGCATTGCAACAGTGGGCGGCTAACC 2251090 28 92.9 32 ....A......T................ CAGAAGTCGAGAACGTCGATCGTCTCGCTGTC 2251150 28 89.3 32 ....A.....A.............T... TTGCTGTTCTGTCGTGCAGCACATGCCGTCAT 2251210 28 96.4 33 ....A....................... TGGGTAAAGCGGTGGATTGATGAGAATCACAAC 2251271 28 78.6 0 ....A............T.T...T.GG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGAAGGCTTAGGCGTGTGGAGTGGTCGGGGAGAAGACGGGGCGGCGAGGGCCGCCCTGAATGCTGAAGCCGCGCGCTCGGGCGTGCATCAGGCGAAGCGCGTACCTGCGAGGATCGATTCCGGTCCGGCGATCGGTTTGGACAGCGATTGCCGTGTCGGGCCTGGACGAATCGGCCGGGCAATTGTGCGGAAGGTGCCGGGTCGTGCATCGCTGCTAACGATGGCAGTCCGATATTCACGCCAAGATCAACGGGTTGTCGAGCAACCTGCACGCGAGTATGCTGCGTCCCGGCGCGTCGCACGTGCTCGTCACAGCGCGTCGGTCAGTAGCATTCGGCACCGCGGCACAGGGTCGGCGATGAAGTTTTCACCCTTTTTTCGTTTGGTTCTTCTTGTCCTTCTGAATCAAGGCATTGCAACGTTGCCGTAATTTTGGGGTAGCTAGTCGTCGTCGAGCGCAATCTCTCTGCGAATCAAGGGCTTGTTGTCATTTTTGGCTA # Right flank : ATCGTCCGAGACGGCATGCGCAACTGCGACGCGTTCGCAACCGCCACGACAACTCGCGAACCAATCCCCGCACTGCACAAGCCCGCGACACCACCTGCGCGTGCGACGCCCATCCACCGCACGCGCCCATCGCTGCATAGCACGAAAGATAGCGACGTTCGACCGCCCCATCAACGCCCCCCCGGCAACGCATAAGCAATCACATAATCCCCCAGCTTCGTCAAAAACGACCCATGCCCGCCCGCCGCGATCAGCACGTACTGCTTGCCGTTCGCCTCGTAGGTCATCGGCGTCGCCTGTCCGCCTGCCGGCAGACGCGCGTGCCACAGCTCCTCGCCGGTATCGGTGCTGAACGCGCGCAGATAATCGTCCGACGTCGCGCCGATGAAGAACACGTGACCCGCCGTCGTCATCGGGCCGCCGAGCATCGGCATCCCCATCTTGAACGGAAGCGGAATCGGCGATGCATCGCGCGTCGTGCCGATGCGCTTCTTCCAGAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158046-156134 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR733548.1 Burkholderia sp. 8Y isolate Burkholderia sp. 8Y, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 158045 28 100.0 33 ............................ GCTTGTTGATCGTCAGACACGGACGCTGGTCGT 157984 28 100.0 31 ............................ GCGTGGTGGCGAGTCCTGCGCCACTGCCTGT 157925 28 100.0 32 ............................ AGCCAGGCTCAGACCACCGTGCGCGGCACGAG T [157899] 157864 28 96.4 33 ..........................T. TGAACAGGTGGCCAACTTCGGTGATGCGCTTAC 157803 28 100.0 32 ............................ CTAGACGCAGCAGCCAAAGCGAATATATTCGC T [157777] 157742 28 100.0 32 ............................ TTGTCGGTGGGAATCTTGCCGATTGCCTGAGC T [157716] 157681 28 96.4 31 ..........................T. GCCGGACGCTGCGATGGACCGGCGACACGCT 157622 28 100.0 33 ............................ GTGGATCGAGTTCAGCGGGCAGGGCACTAAAAA 157561 28 100.0 33 ............................ TTTGAAGATTCCACCCATCAATCCCTCCAAGCC 157500 28 96.4 33 ..........T................. CGTGATGCCTACGCCGCGCAAGTTTTGGCGCAA 157439 28 100.0 33 ............................ CGCGATCTTTAGCGCGTATGTCGAAAGCCCTTT 157378 28 100.0 33 ............................ CAGACGAAGATAACACCGGGAGGAGCGTTGAGC 157317 28 100.0 33 ............................ GTTCGCGACGATCAGAGCAGTCGCCAGATCCGG 157256 28 100.0 33 ............................ CGTATCTATATCGGTACTATTGCAACTAATGCA 157195 28 100.0 33 ............................ GCTTTCCCGTCACGCCGCACCCCCTTTATATCG 157134 28 96.4 33 ...........T................ CGCGCCTGGCACATGGCCGTGCAGAAGCGTTTA 157073 28 96.4 33 ........G................... TCGACTAGATAGACGACGCGGTTCGTGACGTCC 157012 28 100.0 33 ............................ CTCGCAGCCGCAGACCTACCTTCGAGCCTGGCA 156951 28 96.4 33 ....................C....... CGCGTCGCGCGTCATTCTCGATCCATCGCTCAT 156890 28 92.9 33 .......TT................... CGAGCACGCGGAGATGTCCAATCGGGTGGCCCT 156829 28 100.0 33 ............................ CGTTAAGGGATGCGTAAGAGCGGATATGGCGAA 156768 27 92.9 32 .........T...........-...... CTGGCTGATGGCCTTTCTCGGGCTTGCGCAAG 156709 28 100.0 33 ............................ TTGTCGCGAGCAGGCGGCGCTGCTCGGCGGGGA 156648 27 92.9 33 .....G..-................... CTCCTCGAACATGAAGCCCACTTGAGACGAAAA 156588 28 100.0 33 ............................ CCAAGGTGAGAAGCTCATTTCTCTTTGGTGTGA 156527 28 100.0 33 ............................ GTCGCCGTGAATCGACAGTACGACTTCGTAGCC 156466 28 100.0 33 ............................ GTACTTGACGCCGTACATGATGAGCGGCTGCCA 156405 28 96.4 33 .........A.................. GGTATTCCAAGTCGGTTGGCACGACGCAATGCG 156344 28 96.4 33 ...........................G CAGTCGTCGACGCCTCACCCCCGGAGTCGAGTC 156283 28 96.4 33 .....................G...... GCAGTGGGAAATCGCCAAGGGCTATCTCGACAT 156222 28 85.7 33 .A..........CG.........G.... GTTCGCCGAAGTGCGCAGGCGCACGCTCGCGGA 156161 28 89.3 0 ...C..................C..A.. | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.5 33 GGTTCCTCCGCGTATGCGGAGATAGGCC # Left flank : GTCGAAGGCGTTGCGCAAACGCGTGCCTTGTTTGAGCGCGGCTAGAAAGCAGGCGGCGACGTCCATCATGTGGTCGTACAGCGGGTGCATGCTGCGTTCGCCGATGCAGTCGGCGGCGTCGCGGCTAAGTTTTCCCCACGGCTCTAGCGGATGCGCTTGCGGTTCCATGATTGCCTGCTGTGGTCCTCGTCGTGCTTTTCATTTATTGCGGATATTCGTTCGCAATGCTTAGGTTAGCATCGGATCAGGCCCGAAGACGCGCACTTTTCTGTCAAAGTTTTTTGATGACAGGGCGCAGGTATGTTGGGCGTCGCGTGATGGTTTCACTGCTTTTCGGCAACCGTATTCGGACGGATGCGGTCGTCCGCCGCATAGTCAACTGGCGCTCGACGCACGCAATTGACGGCGCATCTTCGACCCACCATACTCGCGTGCTGGCAGTGAATTCGGAACATCGGGTACGCTGTTTGTTCTTTAACATCATTGAGTTAGGTGGTAGG # Right flank : AAACAGATACCTCACCCCCCAAACCTCGCCCGCGCCGCCTTCGCCACCCCCACCAACGCATCCCCACTCAACCTAGAAGCGATCTCCTCAACATACGCATGATGCCGCCCCTCAAGCGCCGCACCCAGATACTGCGCATGCAAATACCGAATCAGCGCAATCCGCCGATGCCCCAACGCGATACTCCTATCCAGCAGCGCAAGCGCCGCCTGCGCATCGTGCTCTTTACAGGCGCGTTCGGACAAACGCGCCGCCGCATCGCGCGATGCGTTCATGCGCTCGATACAGCCAACGCCTGATGCGCGCGCAACGCATCGTAATCCGCGCGCCGCCAGTCGAGTTCGAGCGCGAGCCTTCGCGTGCCCTCGCGAATCTTCGGCTTGTGCAGCGTGAGCGTCAGCGCATCGAGCTTGGGCCATTCATCGAACGATAAAGCGGCGATCTCCACAGCAAGCGTTTCGAGCAAGCGCGTATGCGTCTTCGCTTGCAGATAGGCCGTC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTATGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 167275-167851 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR733548.1 Burkholderia sp. 8Y isolate Burkholderia sp. 8Y, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167275 28 100.0 33 ............................ CCGTTCGGGGACCGCATGGAGGACCTACGGGCG 167336 28 100.0 33 ............................ CATGAGGGGACAGGGCGGCTACGCCTACCAGCA 167397 28 100.0 33 ............................ CCGTTCTACATCGGGAAGGGAAAAGGTCGGCGC 167458 28 100.0 33 ............................ CCCCGGCCGCATTGAAGACCTGCAGTCCGAATC 167519 28 100.0 33 ............................ TTGCATCAAGAGCGCGAAGATGCGCAATTGATC 167580 28 100.0 33 ............................ TCACCGAATCCTCGAACACTCGCACCCCTGCGA 167641 28 100.0 33 ............................ CCGCGCCCTTGAGGCACGAGGACATCACCGCCA 167702 28 100.0 33 ............................ CGCGACGATTCTCGGCATTTCGGAAAACTCGCC 167763 28 100.0 33 ............................ CATGGCGATTTTGATCGCATCGAGCCTGATGTT 167824 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GGTTCCTCCGCGCACGCGGAGATAGGCC # Left flank : CTCGTGCGACGAGAGGCGGCGCGCGTCTTTCGGAAGCAGCAGGTGATTCCCGCGATGATCGATCGCATCAAGCAAGTACTGCGAGTGGACGAGAAGCTGGAGGAGGCGGATGGCGCTGGTCGTAGTGGTGACGCGTGACGTGGCGGACCGCTTCCGTGGGTATCTGGCCTCGGTGATGCTGGAGGTATCGGCTGGCGTGTACGTCGCGCCGCGGATGAACAAGGGCGTGCGCGAGCGGACGTGGTCCGTGCTCGCCGAGTGGCACAGCGCCGAGCCGAGGGGCAGCGTCGTGATGGTTTGGCGGGAGCTCGATGCGGTCGGGGGAATCGGGATCGCGCAGTTGGGATCGCCTGCGAGGCAGCTCGTGGATGTGGATGGGATGTATTTGGTGAGGCGGGGAGTGAGGTAGGTCGGGGTGACATTCGTTCTTTGGAAATTTGGATTTTTTGGCGGATCAGGTTCGGGGTTTTGCGTTCTCAATCATTGAGTTATGACGGAGA # Right flank : CTGGATTTGAGTTGTGTGCGTCAAGCTGTGCAGAAACCGGATGCCAGTGGTTTCAGTTGATCCTTCTGTGCGACGTTCGGTGCGAAGGGCGTAGCCCGCAGCGCCGAACGCCGCACGCCGCTATGCAGCAGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGCACGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //