Array 1 84633-91837 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMF01000001.1 Bifidobacterium pseudocatenulatum strain AM10-2 AM10-2.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 84633 29 100.0 32 ............................. TGTCCTGCTGCGTGCTCGTATGCGTATTGCCG 84694 29 100.0 32 ............................. GAGACGGACGCCACCACCGCAACGTCCACCGC 84755 29 100.0 32 ............................. AATATGATGGCGACTATGCAGATTATGCGATA 84816 29 100.0 32 ............................. GGGTACGTGCTCAAAATATTGTTTTTGAGCTG 84877 29 100.0 32 ............................. GCCATGTCTGCTCACCTCCTAAAACAATGGGG 84938 29 100.0 32 ............................. AGCGTATCGCTGCCAACATGTCCAATATCACT 84999 29 96.6 32 ............................T GCGCTCAAGGTGCCGAAAGCGTCGAATCTCGC 85060 29 100.0 32 ............................. GGATATCACCGAACAGGAATCGTATTTTAACG 85121 29 100.0 32 ............................. CGGTTTATGGTCACGTCCGGCAATATCGGTGG 85182 29 100.0 32 ............................. CGATAGCGTCTTCGCTAATCCAACGTCACAGG 85243 29 100.0 32 ............................. CGTTGTTGACGGACATGAACGTTGGAAAATTG 85304 29 100.0 32 ............................. GCGCCCGACGTGGTAGGGGGTACGGTTTGGGT 85365 29 100.0 32 ............................. GGCTGAACCGTAGTGAAATATCGTTGTCGCGG 85426 29 100.0 32 ............................. GTAAGGAGCGTGCCGAGGCAATCCGTCGTAAG 85487 29 100.0 32 ............................. TGTTCGGCCATTTGGCGTCGTTGTTCTCGATA 85548 29 100.0 32 ............................. GGCATTGCAAACCCGAATCTGATTTATCCAGG 85609 29 100.0 32 ............................. TTATTGAGATCCAGATTTCCGCCATAGCCAGG 85670 29 100.0 32 ............................. GACGTGATTTTCGTAATCTCGATAAACATTGG 85731 29 100.0 72 ............................. GTGGAGATGGTGGCGCATAATTCCACGTCTCCCTGATAATCAGATCGGCAGATGGTATCTGCTCAGGCTCAT 85832 29 100.0 32 ............................. GAAACGGACGCCACCACCGCAACGTCCACCGC 85893 29 100.0 32 ............................. ATTGTGCGTGTCGGCACTCCGGCCGCTTGATA 85954 29 100.0 32 ............................. CGGATTCCAATACGCCGGACGATTTGACGGCC 86015 29 100.0 32 ............................. GTACTGTAGATGCCGTTATAGTCGTCGTCGGT 86076 29 100.0 32 ............................. GACGGACGTAATCTATTCGACGGAGTGATTCA 86137 29 100.0 33 ............................. TGCCGTGACTTCACCCTGCCCGACGTCGATTTC 86199 29 100.0 32 ............................. ATGGTACGTCGCGCCCCGATAATCGGTGACGG 86260 29 100.0 32 ............................. GGTGATAGCGCGACCATCCATATCGGCATGAT 86321 29 100.0 32 ............................. TCGTATGACCGTGCGACCATCGACCAGAAGTG 86382 29 96.6 32 ............................G TTTGACGTGCTGGGCACTCATACGGTCGGCGG 86443 29 100.0 32 ............................. GCGCACGGGGTGAACGGTGACACGCCATAGAT 86504 29 100.0 32 ............................. ACCGCTGTAATCTGCGACATAATATGTGGATA 86565 29 100.0 32 ............................. GAGAAGATTATTCGCCATTACGCGCTTAGGGA 86626 29 100.0 32 ............................. GCCATCGCCGGAATCAACGCCCAAGTGCAGCA 86687 29 100.0 32 ............................. TAAAAGTACAAGAAGAAATAAATCACCCAACA 86748 29 100.0 32 ............................. CAGCGGTCTTCAACTGCGCCTTGGAAGCGGAC 86809 29 100.0 32 ............................. GGACGTCACGAGAACATGATCCCGGCAAGCGC 86870 29 100.0 32 ............................. GCTCTCAGGTGCCCGCGCTCGACACCATGCTT 86931 29 100.0 32 ............................. CCGTATGGACGCGGAACTTACCGAAACCCTTG 86992 29 100.0 32 ............................. AGGTGGCCGGACGGCACCGCCGAGTGTGTCGC 87053 29 96.6 32 ............................T GCTCGTGCCTCAATGGCACGGTCATTACGTAC 87114 29 100.0 32 ............................. CGCCGAAATCCTCAAGGTTACCGCTCAGGCTA 87175 29 100.0 32 ............................. GTTCTGCACGCTCTCCCGTGACGCTGGCGTGC 87236 29 100.0 32 ............................. GTAGTTCGGGGACTATGCGGACAATAAAAGTC 87297 29 100.0 32 ............................. GGAGCCTGATGCGACAACATAGCGCCGATAAG 87358 29 100.0 32 ............................. GCATCATTTGGCATCACGAATTTTCCAACGTT 87419 29 100.0 32 ............................. ACGATATCCAGCTCGGCAACGCCTATGTCGAA 87480 29 100.0 32 ............................. ATGTCTTCCGGAATCGGAATAATGCGATACGG 87541 29 96.6 32 ............................G ACTCAATCGACTCACCAGCACAAGAGGCTATG 87602 29 100.0 32 ............................. GCCGCAGCCTGACGAGGCCGAGCCGGATCATA 87663 29 100.0 31 ............................. CCTTAGCCAAAGCCGTAGCGTTCTTGATCTT 87723 29 100.0 32 ............................. TCCAGTGCGAATGTGCCAGTCTCATTCCACTT 87784 29 100.0 33 ............................. GCCACCATCGACGCGACCGACAAGGCATCCAAG 87846 29 100.0 32 ............................. ACGGAATACTCGCCGAGCACCACCACGACCAA 87907 29 100.0 32 ............................. AGCCATGAGAACGACTTCACGAACGACAAGAT 87968 29 100.0 33 ............................. GAGGCATGACCATGGCCGGCCCCTTCGCCACCG 88030 29 100.0 35 ............................. AGTTATTATCTTACCACCTTCTCGTCGCAGTTCGC 88094 29 100.0 32 ............................. CCAAACTGGAGAGCGAACGTACGCCCAACATC 88155 29 96.6 32 ............................T CCCGGCGTGTCGCATTTCGCCATCACGCCGGG 88216 29 100.0 32 ............................. TCAAACATGGCGAATACGACGGCAAGCATACG 88277 29 100.0 32 ............................. ACGTTGACACCATCGAGCTGCGTACGTTTGAC 88338 29 100.0 32 ............................. AGTGAGCTTTTCATATCGGGCTGCGATCTTCC 88399 29 96.6 32 ............................T CCCCCCTTGCGTGCGTATTCCGCGAAGCACTG 88460 29 100.0 32 ............................. TTTGCAGTGACGTTGGCCGCTCCTACACCGGT 88521 29 100.0 32 ............................. AAGCATCCGGACAGGGTGCCGCCCGTGAAGTT 88582 29 100.0 32 ............................. TGGGTGGGGCTTGTCTTCACAACTCGGCCATG 88643 29 100.0 32 ............................. TGGATGCGGCCGACCAGACCCGACAGGATGCG 88704 29 100.0 32 ............................. AGTGTCCTCAGTTTGGGCAGGAGCAGGGGTTC 88765 29 100.0 32 ............................. GTCTTGCGGCATATCGGCTCACGTACCACCCC 88826 29 100.0 32 ............................. GGCGCGTAGGCTCCGGACGCTCCGCCTGTGGC 88887 29 100.0 32 ............................. GTCATCCGTCTGCGCGAGGAATTCCTTGACGT 88948 29 100.0 32 ............................. GAATGTCTGCCGTTGCATTGCTGCCTCCTCTT 89009 29 100.0 32 ............................. ATCGATGACACGACCATCACGCAGCTCGTGAG 89070 29 100.0 32 ............................. GTGTCGGCTGAGGTCTTGCCGCTGTAGCCCTT 89131 29 100.0 32 ............................. CAGTGCCGACCGTCGCCCTGTTGGACGAACTC 89192 29 100.0 32 ............................. GTCTGAACGAGTTTTCGGGCGTGTCGCAAGGC 89253 29 100.0 32 ............................. GACGAACACCAAGACACTATCGAATTACGAAC 89314 29 100.0 32 ............................. CTCGGCAACCAGCGGACCATGCAGCTAGCCGA 89375 29 100.0 32 ............................. ACAGCAGGAATGGTTTGACAAACTGGACGGCG 89436 29 96.6 32 ............................T TGTATTGCGGCGGCTTTATCTGTTTGGAATTG 89497 29 100.0 32 ............................. GTTATTTGGAGTTGACGCTTTTCGAAAACGGC 89558 29 96.6 32 ............................A CTTGCGTTGCGCGGAAATGTACAGCTGATTAA 89619 29 100.0 32 ............................. GCGCGTAAGGCCGCGCACTGGGATAACCAGAG 89680 29 100.0 32 ............................. GGCTGAACCGTCGTAAAATACCGCTGTCTTGG 89741 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89802 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89863 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89924 29 96.6 32 ............................G GCACTGCTTGTGGACAATACGGTGGATAACGC 89985 29 100.0 32 ............................. GTGTTGGAGAGTGCTTGCGAATTGCTGGACAC 90046 29 100.0 32 ............................. CTTGTCACCGGCACCGCCAATGCCGAACATGT 90107 29 100.0 32 ............................. AAATACAACAAGGGCAAGCTGTTCGCCACCAT 90168 29 96.6 32 ............................T CTCAGCAATATAATCCGCCATGCCCGACTCAC 90229 29 100.0 32 ............................. GGGGGAGTTCGTGGTTTCCAACATTTCGTCCC 90290 29 100.0 32 ............................. CGGCCGGTCGGAACCACATGCACCAGCTCTCC 90351 29 100.0 32 ............................. TGGGTAGGCAAAGGCCTGTTCTGCATCGATTG 90412 29 96.6 32 ............................T ACCGTGGCGAGACCCTGCACATCAAGCGCCGA 90473 29 100.0 32 ............................. AGCATTATGACACAATCCAAAATCATGCACGC 90534 29 100.0 32 ............................. AAGATGACAACGATACTCATACATTCCATCAT 90595 29 100.0 32 ............................. GCGGACGCGCTCATGCACCGGTTCTATCGTCT 90656 29 100.0 28 ............................. ACAAAAGAACACACACACAACAGAACAG 90713 29 100.0 32 ............................. TGCAGGGCGACGACATGCTCCAGCTCATGGGA 90774 29 96.6 32 ............................T CGAATCGTTGACCGGTCAGGTCGATAACGCCA 90835 29 100.0 32 ............................. GGGGGATGCAGCCGATTCTACGCCGATGCGAG 90896 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 90957 29 100.0 32 ............................. TGGTCGGTGACGGGGCATTCGACGAGCGGCGT 91018 29 100.0 32 ............................. TCCTTGACGTGGCGCAACGTGGTGGCGCTCAG 91079 29 100.0 32 ............................. GCGCTCGCCTCCGTCAAAGGCACGGCCTTCGG 91140 29 100.0 32 ............................. CTGTGGATGTCGGCGTTGGAGTCGCCGAGAAT 91201 29 100.0 32 ............................. GGATTCACCCTCAGATGCGACGCGACACTGAA 91262 29 96.6 32 ............................A CTGTGGCACGACGGGCTGAAAGGCAACGTATG 91323 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 91384 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 91445 29 100.0 32 ............................. GTGGATGTCCGCGGAAACGTCCCTAATTTGGT 91506 29 100.0 32 ............................. CATGGTTCGCCATTCTCGTCGGTCAGTGTGCG 91567 28 96.6 32 .................-........... AAGGATACGCTGCCCATGATCGTCGGCACGAA 91627 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 91809 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 116 29 99.5 33 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCTGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //