Array 1 45872-44450 **** Predicted by CRISPRDetect 2.4 *** >NZ_FEWQ01000011.1 Neisseria meningitidis strain 2842STDY5881518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45871 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 45805 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 45739 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 45673 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 45607 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 45541 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 45475 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 45409 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 45343 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 45277 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 45211 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 45145 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 45079 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 45013 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 44947 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 44881 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 44815 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 44749 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 44683 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 44617 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 44551 36 100.0 30 .................................... CAGGGGATAGGCGGGACGGCCGCGGTGGTC 44485 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //