Array 1 527975-529100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022490.1 Salmonella enterica subsp. enterica serovar Braenderup strain SA20026289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 527975 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 528036 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 528097 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 528158 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 528219 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 528280 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 528341 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 528402 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 528463 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 528524 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 528585 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 528646 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 528707 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 528768 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 528829 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 528890 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 528951 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 529012 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 529073 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 545359-547465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022490.1 Salmonella enterica subsp. enterica serovar Braenderup strain SA20026289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 545359 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 545420 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 545481 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 545542 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 545604 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 545665 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 545726 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 545787 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 545848 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 545909 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 545970 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 546031 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 546092 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 546153 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 546214 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 546275 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 546337 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 546398 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 546460 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 546521 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 546582 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 546643 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 546704 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 546765 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 546826 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 546887 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 546948 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 547009 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 547070 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 547131 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 547192 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 547253 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 547314 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 547375 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 547436 29 89.7 0 A...........TC............... | A [547462] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //