Array 1 79536-81023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021521.1 Neisseria meningitidis strain 09-292 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 79536 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 79602 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 79668 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 79734 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 79800 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 79866 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 79932 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 79998 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 80064 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 80130 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 80196 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 80262 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 80328 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 80394 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 80460 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 80526 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 80592 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 80658 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 80724 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 80790 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 80856 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 80922 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 80988 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGCGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //