Array 1 193501-191641 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUY01000008.1 Salmonella enterica subsp. enterica serovar Goldcoast strain SalGC_ZJ_53 NODE_8_length_238874_cov_100.039318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193500 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 193439 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 193378 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 193317 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 193256 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 193195 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 193134 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 193073 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 193012 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 192951 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 192890 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 192829 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 192768 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 192707 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 192646 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 192585 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 192524 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 192463 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 192402 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 192341 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 192280 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 192219 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 192158 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 192097 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 192036 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 191975 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 191914 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 191853 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 191792 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 191731 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 191670 29 96.6 0 ............T................ | A [191643] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212053-210073 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUY01000008.1 Salmonella enterica subsp. enterica serovar Goldcoast strain SalGC_ZJ_53 NODE_8_length_238874_cov_100.039318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212052 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 211991 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 211930 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 211869 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 211808 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 211747 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 211686 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 211625 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 211564 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 211503 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 211442 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 211381 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 211320 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 211259 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 211198 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 211137 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 211076 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 211015 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 210954 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 210893 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 210832 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 210771 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 210710 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 210649 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 210588 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 210527 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 210466 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 210405 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 210344 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 210283 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 210222 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 210161 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 210100 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //