Array 1 1567926-1569347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045034.1 Limosilactobacillus fermentum strain USM 8633 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1567926 36 100.0 30 .................................... AGATAATTATGGGTTATAAAGCAACTCCTC 1567992 36 100.0 30 .................................... ATCTTTACGGTTTCAGCATCACCATCTTCT 1568058 36 100.0 30 .................................... AACGGACTGATGCAATGTTAGACGCCCTTT 1568124 36 100.0 30 .................................... AAAATATACTCAATTTGATACCCAGGGTGT 1568190 36 100.0 30 .................................... TTAATGATGCGCTGAAAGGCATTGCCAGTC 1568256 36 100.0 30 .................................... ACAACTATTTCAATCTATCGAAATTATTAC 1568322 36 100.0 30 .................................... GAGTAACAGTGGCTTTACGCGTGAGAGTAC 1568388 36 100.0 30 .................................... ACCAGGTTTTGCGTAACTTGATTGACGCCA 1568454 36 100.0 30 .................................... AAGTGGACGGTCAGCTCTACACCATCAGAG 1568520 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 1568586 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 1568652 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 1568718 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 1568784 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 1568850 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 1568916 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 1568982 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 1569048 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 1569114 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 1569180 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 1569246 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 1569312 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2073693-2072383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045034.1 Limosilactobacillus fermentum strain USM 8633 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2073692 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 2073631 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 2073570 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 2073509 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 2073448 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 2073387 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 2073325 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 2073264 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 2073203 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 2073142 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 2073081 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 2073020 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 2072959 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 2072898 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 2072837 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 2072776 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 2072715 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 2072654 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 2072593 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 2072532 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 2072472 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 2072412 29 79.3 0 ...T.......TC.A........A....C | T [2072407] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //