Array 1 231828-233013 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODI01000005.1 Salmonella enterica subsp. enterica serovar Newport strain R8_0830_R1 NODE_3_length_359193_cov_0.750411_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231828 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231889 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 231950 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232011 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232072 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232133 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232194 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232255 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232316 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232377 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232438 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232499 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232560 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232621 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232682 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232743 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232804 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232865 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 232926 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 232986 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249683-251298 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODI01000005.1 Salmonella enterica subsp. enterica serovar Newport strain R8_0830_R1 NODE_3_length_359193_cov_0.750411_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249683 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249744 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249805 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249866 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 249927 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 249988 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250049 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250110 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250171 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250232 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250293 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250354 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250415 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250476 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250537 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250598 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250659 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250720 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250781 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250842 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 250903 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 250964 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251025 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251086 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251147 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251208 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251269 29 100.0 0 ............................. | A [251296] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //