Array 1 158-1467 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGL01000026.1 Escherichia coli strain BE565 sequence026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158 29 100.0 32 ............................. CCCCTGGTGATGCCGGAAAAATTCATCCTTTC 219 29 100.0 32 ............................. GCGTTGACCGTGTACGCAAACAGGCTGAATAT 280 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 341 29 100.0 32 ............................. CAGTGGTTGCAGGCCTGTTTGTTGTTGACGCA 402 29 100.0 32 ............................. GGTGGGATCATCGGTACTGACGTCGGCGCGGT 463 29 100.0 32 ............................. CGTCCGACTCAAACAGGATCATGAACGTTTCA 524 29 100.0 32 ............................. CGGCGTTGCCTTCGCCTTTGTATCCTGCGAGT 585 29 100.0 32 ............................. CGACAGAAAGGGAGATTGCGACGCTCCGTCAG 646 29 100.0 32 ............................. CACCATAATATTGCAGGGTTAACGTAAAATCC 707 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 768 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 829 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 890 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 951 29 96.6 32 .........A................... TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1012 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 1073 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 1134 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1195 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1256 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1317 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 1378 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1439 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18170-18372 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGL01000059.1 Escherichia coli strain BE565 sequence059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18170 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 18231 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 18291 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 18347 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53003-51876 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGL01000010.1 Escherichia coli strain BE565 sequence010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53002 29 100.0 32 ............................. CGCTATCAGCCCAATTCATTAACCCATCACTA 52941 29 100.0 32 ............................. GCAATGATGGACAGCGCGGAGATCGGGGAGGT 52880 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCCTAT 52819 29 100.0 32 ............................. AAATGCAAACAGCAAGCTCAGGAGAATTTACT 52758 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 52697 29 100.0 32 ............................. TAGCTGTTATTAACGAACCTGTGAGAATAGTG 52636 29 100.0 32 ............................. CGTCGGAACGTAAGGGCCAGCGTTTTATCTTC 52575 29 96.6 32 ............T................ CTTTCCATGTACTCATCCTTACGATATCCAAC 52514 29 96.6 32 ............T................ GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 52453 29 96.6 32 ............T................ CGAGCGCAACACGGCCATATTATTACCCCATT 52392 29 96.6 32 ............T................ CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 52331 29 96.6 32 ............T................ AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 52270 29 96.6 32 .T........................... CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 52209 29 96.6 32 .T........................... TGTTTTAGAGATGTGTATTCAAAATCAGATAG 52148 29 96.6 32 ............T................ AAATTGATCCCAGGGTGATTATCGTGGGGATC 52087 29 96.6 32 .T........................... ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 52026 29 96.6 32 .T........................... GGTAAAAACACGGTCTGAACCGACATTCATGT 51965 29 93.1 32 .T..........T................ GGCGCACTGGATGCGATGATGGATATCACTTA 51904 28 75.9 0 ..A........C..T....T-.G.....C | C [51879] ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCCGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAAACGGGATTTGAGTTCCAGACATTTGGGTTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //