Array 1 2988768-2988190 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP070312.1 Salmonella enterica strain Colony598 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                                              	Insertion/Deletion
==========	======	======	======	=============================	=============================================================================================	==================
   2988767	    29	 100.0	    32	.............................	CGGACANNNNNNNNNNNNNNNNNNNNNNGCAA                                                             	
   2988706	    29	 100.0	    32	.............................	TCTTNNNNNNNNNNNNNNNNNNNCAGTCCGTC                                                             	
   2988645	    29	 100.0	    32	.............................	CCCGTNNNNNNNNNNNNNNNNNNNGACGGGCC                                                             	
   2988584	    29	 100.0	    93	.............................	GCTACATCGACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCGGG	
   2988462	    29	 100.0	    32	.............................	GCGACNNNNNNNNNNNNNNNNNNCAGGACCAG                                                             	
   2988401	    29	 100.0	    32	.............................	TTTTAGNNNNNNNNNNNNNNNNNNNNNTGAGC                                                             	
   2988340	    29	 100.0	    32	.............................	AATCAGNNNNNNNNNNNNNNNNNNNNNNGTTG                                                             	
   2988279	    29	 100.0	    32	.............................	GGCGNNNNNNNNNNNNNNNNNNNGCAGGATAC                                                             	
   2988218	    29	 100.0	     0	.............................	|                                                                                            	
==========	======	======	======	=============================	=============================================================================================	==================
         9	    29	 100.0	    40	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                                                                             	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT
# Right flank :  GGGATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGTTCCCCGCGCCAGCGGGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGC

# Questionable array : NO	 Score: 5.62
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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