Array 1 27031-25876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJETY010000002.1 Staphylococcus pseudintermedius isolate 17S01533-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27030 36 100.0 30 .................................... GAAGCCCGCTCTGTTTATACGGCAGTAAAA 26964 36 100.0 30 .................................... AAGGCGGTAAGCGTTATATCGAAATTGAAC 26898 36 100.0 29 .................................... ATGAAATTCATTACACAAGCTTGAAACAA 26833 36 100.0 30 .................................... GCCAAGACTTTAGTAGAGCAGGCAAACGAT 26767 36 100.0 29 .................................... TAAATCATTAGACAATGCGTGTCGTGTTA 26702 36 100.0 30 .................................... ATATTCTGTGTTATTATCATGTGAAATTCT 26636 36 100.0 31 .................................... AAAGTATTCTAGTAGATCTTGATAAGCGTAA 26569 36 100.0 29 .................................... GAGATGACGCTTTTACAAAATCTTTGGCT 26504 36 100.0 30 .................................... CAAAACTGAATAGATACGATAGGTGTTTCG 26438 36 100.0 29 .................................... AATGCTGGCACAAAAGATGGTGGACGTGA 26373 36 97.2 30 ............................A....... TTACGAGCAGTTTTTTATTACACTCGGCCG 26307 36 97.2 30 ............................A....... CAAAAGTTTGATGGCCACGTATGGGTTTCT 26241 36 97.2 30 ............................A....... GACAGAATTACAAAAGGAATTACGCAAACG 26175 36 97.2 29 ............................A....... TCCTCTTCATCAGTTCTGTCTGTTTATTA 26110 36 97.2 30 ............................A....... AAGGTGAAATGGTCATGAAGATTAGAAGTG 26044 36 97.2 30 ............................A....... AAATCAAATGGAAAAAGAAGTGACAGGCTC 25978 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 25912 35 86.1 0 .........T................-.CA.C.... | TT [25879] ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.1 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 120965-119318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJETY010000004.1 Staphylococcus pseudintermedius isolate 17S01533-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 120964 36 100.0 38 .................................... TTCATTGTTCCTAAAAATAGTATCAGATAAAGGCTGTA 120890 36 100.0 36 .................................... TCATATTCAGAAAATAAATTGTTTATCTTCTTTTCT 120818 36 100.0 38 .................................... TTTAATAATTTTTCAATAGTTTTCATTTAAATCATTCC 120744 36 100.0 38 .................................... TTGTAGACCATGTATATCCTCTTTATGACATTACAGAA 120670 36 100.0 34 .................................... ACATATGCTTTTATATATACTCAATATATCTTCT 120600 36 100.0 38 .................................... TTCTTTCTTTCTTTCTACTTAAGAATACGAGTCTATAA 120526 36 100.0 37 .................................... CCTAATTCTGAATTGTTTTCAATTTTAATTTCTTGTA 120453 36 100.0 38 .................................... TACGTAATGTCAGCACAAGCGCTTAACATATTATTACA 120379 36 100.0 36 .................................... AAAGATGAGATTGAAACATTTTTTCTAGATCCTACA 120307 36 100.0 35 .................................... CAGGTCTTGAAATAATTTATTTTCAGTTGTTTCTA 120236 36 100.0 37 .................................... AGTTTATTGATGTTATCATATTCTGATAGTTTAATAC 120163 36 100.0 37 .................................... CACAATTGACTTCTAACATATCTAAAAGTTCCTTACG 120090 36 100.0 48 .................................... AGGAATTGATTTTCTTTTGCTCTTCTTAACTTCATTTCACGGATTTTA 120006 36 100.0 37 .................................... AGGAATTGATACAAATGAAAAACACATTAAATAAAGT 119933 36 100.0 34 .................................... TAAAAACATTTTCAATTTCTTTTAGTAATTCTTT 119863 36 100.0 37 .................................... TGAAAATACCGTTGCATAACTTTAGCGAAGTCGTTTA 119790 36 100.0 35 .................................... TACTAGCCATTCCGACTAGGTCGTGAGGACATAAA 119719 36 100.0 38 .................................... TTTCATGTTCTTTACAATAGTTTCGAGGAGTACAACCC 119645 36 100.0 35 .................................... CATAATAAAGTCATCTAGGTCATAAACTGTAATAT 119574 36 100.0 36 .................................... AGCAAAAACTTATTCATTTATGAAGATTAATTTAAA 119502 36 100.0 36 .................................... CGCCAATGATTTCAGCAAATTCAAACACCATTTTTC 119430 36 100.0 41 .................................... CCTCAATACCTGTACCAACTTCTTTTCCCCAACCAAATACA 119353 36 88.9 0 ............C...T..T............A... | ========== ====== ====== ====== ==================================== ================================================ ================== 23 36 99.5 37 AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Left flank : TATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAAGTGGGAGTATGGTAGTTTTGGCAATTGAATAGGCTGCGGAAATATGTTGACTGCAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAAAAGTTAAGAATAAACAAAAATTGAATTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGGTTAAAGAGAAGGTGTCAGTATACAAAGGAAAAGTGGAAAATATACGATAATTACCATGAACAAGAATTGATTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCATGTGGAGAGGATATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTAAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCTCGCTATCAAGGGATTTCTATAGCTGACT # Right flank : TTTCAGCAGCCTGAGAATATTCTTTTTCACTCAAGTCAATCGTATTGAAATACGGATATTAAGGGGGCTTATACCATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATCTGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAATAAAGAAATGTTGTAAAATTTAATTAACATTTCAAGCGATAAAATGGGGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTGTATGTATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //