Array 1 48218-48979 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KQ557120.1 Endosymbiont of Ridgeia piscesae isolate ind11 scaffold6, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     48218	    29	 100.0	    32	.............................	GGCTGGTGGTGCTGACGATGGCGATCATCCAC	
     48279	    29	 100.0	    32	.............................	AACATTAACTGCTTGCCTTTCGGCTTTTTTGT	
     48340	    29	 100.0	    32	.............................	CCACCCCGGAGATAGTTACCGATTCCTGGCGG	
     48401	    29	 100.0	    32	.............................	GCAATTGCCAAGATTGGCTTTGCCCTGGTACT	
     48462	    29	 100.0	    32	.............................	TGGTCGTTTCGTGCTGGCTACGGGGTTGGGTC	
     48523	    29	 100.0	    32	.............................	ATTCCGGGCCGCAAATATCCGACGGCTTAGAA	
     48584	    29	 100.0	    32	.............................	CATTCTTTCCGTTCTGGCGGATGATCCATGTG	
     48645	    29	 100.0	    32	.............................	GTCAATATTCCGCGCCCACAAAGGCGTTATTG	
     48706	    29	 100.0	    32	.............................	GCACTCGGCCAGTCGACGGACATAGGTGCGAT	
     48767	    29	 100.0	    32	.............................	CATCAATGAGCGCCAGTGTTCTGACGCCGTAA	
     48828	    29	  96.6	    32	............................T	TTTGGACTGCCTCGTATCCCTTGATAATCGCC	
     48889	    29	 100.0	    32	.............................	ACTTACGATCTGATTGCCTCGCGTAATAACTG	
     48950	    29	  86.2	     0	A............T..........GC...	|                               	A [48972]
==========	======	======	======	=============================	================================	==================
        13	    29	  98.7	    32	GTGTTCCCCGCACCCGCGGGGATGAACCG	                                	       

# Left flank :   GATTCTGGCCGCCGGCGAACTGCCCCCCCCCAAACCACCGACGGACACTCAGCCCGTCGCCATCCCCGAAGAGAAAGGACTGGGAGATGTTGGTCATCGCAACTGAAGCCATCCCACCCCGGTTGCGCGGTCGCCTCGGCGTTTGGCTAGTAGAGGTCCGCGCCGGCATCTACGTCGGCAACCCCTCGGCCCGGCTGCGTAACTTCATCTGGGAACAGGTGGAAGAAGGACTCGAGAACGGCAACGCCATCATGGCCTGGAGCACCAACACCGAATCGGGCTACGACTTCAAAACCCTTGGTACGAACCGCAGAATCCCCGTCGACTTCGACGGCATCCGCCTGGTTGCATTTCTTCCCGAAACGGAAGAAAAAAATGCTCTTTAACAACCTGGAAATGACCTTCAAGCACCTCGATTGGAAACCATCCGATCGGCCAAAAAGATCGGTAGAACTCAACACGGTGATTTTTCTTATCTCTATCAAATAGATAGAATAAGA
# Right flank :  GGAGTGTCGATTATCTCCGCTACTGAATCTGTGGTTCCCCCGCACCCGTGGCACGTCACCAGCTGCGAAACTAGCTACACGTTTAACCGCAAGGCGGCACAGCGCCTACATTTCGCTCTGTATGATCACTAATCTGCTGACACTCTCGTTCGTCACCTTTTGGGGCATTGCGGCTTCTCTGGCTGTATGGAGGTTCTTTTTGCCCCCGCCCTGCTAATGTTGATCGGCTGGCAGTTCAGCTCTCGCTAAGGCTCATCTGCCCCCTCATCAAGAGCCGAACAACCTCAGGCAATCTCCGCGCCGGGCTTTCCTCAGCTGTGGGATCAACCAAGTCCGCCCCATATTCCCTTCTTGAAGCGAGGTCACTCTCCGGGTACAGGCCGAACCCGCCTCGCCACCTCCAGCGCCCGTTCGCGGGCCTGTTCCACACTCTCAGCGCGGGCCAGCGCCACGCCCATGCGGCGTCGGGTAAAGGATTGGGGTTTGCCGAACAGGCGCAG

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCACCCGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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