Array 1 26992-27127 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000054.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26992 28 100.0 32 ............................ TGACTGATTTTGAATTGCAAGTGTCATTAAAT 27052 28 100.0 32 ............................ AATATAATTGCCGCGCATTGCGTCAATCTGGT 27112 16 57.1 0 ................------------ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTTTGGTTGCAACTTGGTGTTATTAACGAACAAGCGAAAGTGTTGGCAGAAGAAGCTGGTTTGGATGTTGTTATGGATCGTTGCCCAAAAATTGAAATTCCAAGATTAGGACTCGAAAAATAATATTTTTCAGTTTGGATTGCTTAGTTCCTCATCGGTGGATGGAGGGGACTTGGCAAATATCCAATACAGACTTAAGGGACTGGATATTCAGCGGAACTTACTTCTCTAAACATCTTATAAAATCTATTTTTACAGTTATTACAATACATTAGGTTAGTTTAGTTATTTTAATGACAGCTAAGTTTGCCAGAATCTACATTTTTGTTGCTATGAAGATAAGGCATTTTTGCTGTACTCCAGTTTTGACCCTTTTTTATCATCAAAAATTAACCGATTGATTTAAAAGAGAAATAAAATATCTCTTCAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAAGTTAATATGTAACA # Right flank : | # Questionable array : NO Score: 4.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49271-48944 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000034.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49270 28 100.0 31 ............................ ATCCCCGTTCAATTGGCCGAGATGGTATGCA 49211 28 100.0 32 ............................ CACGGACTCAACATATAAAAGAGGTACGTTAT 49151 28 100.0 32 ............................ TTTAAAAAGGGAGTAGCAGGTGATTAAACCTC 49091 28 100.0 32 ............................ TTACCGTCTCCTGGCGGATTGCCATCGGCTTT 49031 28 100.0 32 ............................ ATAACCATAGCTGCACCCAGACATCTGGTTGC 48971 28 78.6 0 .......A.............AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCAGCTTAGAAACATTAAACAAATCGTACGCCACCCATAATCG # Right flank : TCAATCGAGTGCGCTAAAATCTAAAATAAAGAAGTCTATTTTCTACTTGATGAGCATCAATTCTTATGCTTTTGAGCATACGTTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAACCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCTACTGGGTGATAGCCTTTGGGGACCATTACTACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGATTCAAGCGATGGTAATAGGTTTCTTCCAGATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGATAGGAACTGGTACAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTTCCACGTTGTTCTGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000078.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 ............................ GCTTTTCCCCCGCATTCGCCGTCATGATTATG 75 28 100.0 32 ............................ AAACGATTTTTGAGCGCATGAGTGACATGAAT 135 28 100.0 32 ............................ CAGTGCATAAATCGCTATCATCTGACCGTCTT 195 28 96.4 32 ...T........................ AAGGAGAAACAACACAGATCTTTACAGAAGAT 255 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTAGACTTCCGGG # Right flank : ATAGAAAGTTTTCCTTAATTCTCATTCTCCTAAACTATCGAGTGACTGCCACATAGATAACTTAGAGTATAATTATCCCTGTTTAGGGAAGGCACTATGCTATTAATTAGTAAAGAATTGTAAATTTTTTTGATTTACATTTGTGATGTTTTACTTGTGTGAAATTTATGCATAATATTTGCCATAAATGAAATTAATTATTTAGGTAATGCTGATCATGGATAACAACTTTTCTCCGAGTGACCTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGCCGAGTATTAGTTAATGGCGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCTAAAGCGGGTGTTTTAGTCGGTTTTTGTGGTGGTGGAGGTACACCGCTATTTGCGGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9306-9814 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000078.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9306 28 100.0 33 ............................ TTCATAAATAGTATCTTCGTTCAATTTTCGTGG 9367 28 100.0 32 ............................ TGATATCACTCAAATCGAAGCGATAGCCGCGC 9427 28 100.0 32 ............................ AAGCAATTTCAGCGACAATGATGTTAAAGAAC 9487 28 100.0 32 ............................ ATCAAAAATAGAAGGCAACAAGCCGCATGCGC 9547 28 100.0 32 ............................ TAACGCAGTGGGAATGCTTTAGGAGATCCTAA 9607 28 100.0 32 ............................ ATTATCATACTTAGCCATATAATGACCGAGAC 9667 28 100.0 32 ............................ ATGACCGAGTGAAACAACTGGAAACTTACATC 9727 28 100.0 32 ............................ CCTGACTCAACACCGGATACTTTATGCGTGTG 9787 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTATCCTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGACTGATATCCAGCTGGTCCCTCAAGATACTCGATATCGTCGTGTGAGCCGAATGCAGGTAAAAAGCAACGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAGCAAGCTTGGCAACGTATTCCAATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGCCAATACAAGACAGCCCAGAGTCAGGCGTTTTCAGTTCTTATGGATTAAGTTCATCAGCTACCATTCCTTGGTTTTGACCCTTTTTTTGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : AAATTACAGGCACTGGAAAGTATCATCAATGAGTTCACTGCCGTACAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12472-11903 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000057.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12471 28 75.0 32 TAT.TT..G.....T............. AAACTTAGACAACAGGACATCAAAGGCTGGTT T [12460] 12410 28 100.0 32 ............................ ATCAGACGAGGCCACCAACGAAGACAATTTAT 12350 28 100.0 32 ............................ AACATATGCGCCGCATGACGTACAGATATAGA 12290 28 96.4 32 ...................A........ GTAAGAAACCAAGCAAGCGCCTGCTATCCCTA 12230 28 100.0 32 ............................ ATCGCTCCGGCAGACAGAACAACGAGTAACAA 12170 28 100.0 32 ............................ ATAAAGGCACAGAACCGATTCACACGCATCGG 12110 28 92.9 32 C..........T................ ACTAACAACTACACCGATGCGGCAATCACCGA 12050 28 96.4 32 ...........T................ GCTAAAGCGGCAACACAGATAACGATGGCGAT 11990 28 96.4 32 ...........T................ ATTGTATACAGGCTCTAGCTTCCCCTCGTCTT 11930 28 92.9 0 ...........T............A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.0 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GACACTGCCCGGTAGCGGCGTTAAGTCCGGGTATTGACCGGCGCGGATCATCAGACCATTGGAATAAGGCGTAATCACCACATCCGGGTAGCGGTGGCGGGCCAGCGTGTGGCGTATCCATGATTCCCCTCCCAATCGTTCTACAAAGCGTTTGGACAGCAGGGTGATCCAGTTAATCCCACGGATGGAGTGTCCATACTGTAATTTAGCTGTGTGCACTGCGGAGTTCACTTGCAGAGAAGGATAACGTTGCGCTAGCTGGTACTCTAAGGGAAAGTAGTCATGGTAATCTCTGGGCAACACCAGACAATAACCGCAGTCCCCACTGTCCGGTTCGAGTTGTTCACACAGAAAGTCCAGCCAGGCCATAAATCGGGCCATACCCTCTTGCCCTTTTAGATAATCCCAGGGCAGTACCAGACTCAGGTAAGAGCTACTGTCGTCACCATCAATTTCTCGGGAATCCAGGTAATGCATCAGATAGCGGGGAGCTTCATAAA # Right flank : GTCAGCACTCTCATTTACCGAGCCGTTCTCAGAACTGGCGACTTAAGTTGTATTGATGAGAACAATGGGTGTATGTTTTATGAAGATGGAGAGCTCTGTAGTATTCAAAAATACTGTCGTTTAGATGTTTGTGCCTAAATTCCGTAAGATTCATCTTGGAACTTAAAACAGAAAGAGTTGTAGGAAGAAATAGAAGGAATAAGAGAAAAATAGTATCTAGATGTTAACTATAAACGGTTTAGATATATTTTCGATTCTAAGATATTGAATTATTTATTGCTGACAATTATATAAAAACAGTCAATCTTCTAATAAATAGGAATGATGTATTGCTCTTCTTTATGAACTAGACTCTAATTTGAATGAATTACAGTCGGATTATTTTTATAATTATTAAATATGTTGATTATAAAAATATTATTTTTCTTAAGGAGGAAGTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGCAATAATGCTAATGTAATTAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27-362 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000092.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 27 28 100.0 33 ............................ GATGATGTAGAGGTTACAGTTTGGGGCCAATTA 88 28 96.4 32 ...............A............ TTTACTATAAAATAAGTCTATGATATCAACTA 148 28 100.0 32 ............................ CGTCATAACAACTTCTTGTTCCGGGGTCTCGA 208 28 100.0 32 ............................ ACATCAAAAAATGGGACAACAAAACTGACATA 268 28 96.4 39 ...T........................ TTAGAAAGGATGAATGTATCTGGAATATAAATCAGATCT 335 28 85.7 0 ..GT.............T.....G.... | ========== ====== ====== ====== ============================ ======================================= ================== 6 28 96.4 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGCGTTTGGGTTCGGTACATGCTGAG # Right flank : ATGAGTAAGTTTCAATAAGTTGACTTATTCGGCGCATTGACTTCGGTTGGTGCGCTTTTTAAAGTGGCTATTCGAGCTTTTTGTAGTAAGGCTAGTTGCAAGGTGCTACTAGAGAGAATTCTGAATCTGTAACGTTATCAGTTAAGACAAGCGCCAAATTTTGCTTTTTCTTATGGTAAATAACAGTTAAGAGCTTATTATTTTTGGAATTATAATGAGTGGTAGATTCACATAATAAGTGCAATATCGTTACTTCGTAAGTAAATATATCCGTATTCCTTTAAATAATTCATTGGACGTTTTATTATTATTTCCTAATTATCATGAAAATAATTTGAATGGCTTCTTTAATCTATAAAAATAGGTATTATTCTGATTGGGTAATTTAACAAATGCCAACTTCGATTTTATATTTTCTGGATAATAGCAATTGAATTGAAAAAATAGATAAATAAAGAGTGAGTAAAAATAGATATTTATATAATTTGAGTCTGTACATA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5107-5495 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000094.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5107 28 100.0 32 ............................ AAAGAGTTCCAAACATTAGGGTCATCTTTCTG 5167 28 100.0 32 ............................ AGATGAATTAGAGGATTAAATAATGTCAGAAA 5227 28 100.0 32 ............................ ATCACATACTGGTTCTGACGATGAAATTAAGA 5287 28 100.0 33 ............................ ATATCACGAAGCCTCAGAGGGTATTTCTCCTGA 5348 28 100.0 32 ............................ GATCAAGGGCAGCTCATGGAATATACTTATTA 5408 28 100.0 32 ............................ ATCAGTGTATATCACCGCGTTAATTTCAGTCA 5468 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGTTATTTGGGATATTCGCTTGGTGAAAAGCGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCCGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAACCATCGTAGTGGGAAATTGCTGGAACGATTGGGTTTTGAACGCGAAGGTTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAGTTAGTAATGATGGATTAAATCACCGTTGAAAATCTGCTTTCCTCACACCTTATTTTTGACCCTTTTTTAAGGACTGATTTTAATTTATTGATTTTTAATGAAATATTATTTCTCTTGAAAAAAGGGTTTTTTCATTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : GTGCATTGTGGCTTGTTCTGCCAGTGCAAGGAGTTCGACCGATTACCTGTTTATCAGCACCCTTTAGTACGATTTCAGTTTGTGACGGACATTCTGCAGTAATGCCTGCTGGCAGTCGTGGTCAACTGGATGTGAGAAGCCCAGAGACATGTTGATAGCATTGCCTTTGACTGCTGCACGATAACCAACACCTACCAATTGAAGCTTCTTAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000103.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32 27 85.7 32 .AT...-..A.................. ATTCTATTCTTGTAGATGGTGATTTTGTCGAT 91 28 100.0 31 ............................ TATTGCGCAGGTCAGACATCGCCGCATGGAC 150 28 100.0 32 ............................ TGCTTTACTACCCCTCTTTGCAAGCATCTCCG 210 28 96.4 31 ...........C................ AAAAAGACAATGCAAAGTCTCGCAGATTGGC 269 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGATACTATGAAGTTGCTAGGATCACCAACTG # Right flank : ATTGGCAAAACAAAGCATAATCAACCCGCTCATTTGCTTTTAACCCGGGGAAATCCGCTCCGTACTCGGCTTTAACTTTTTGAGGATCATACGAACTGAACCCAAGAATATCTAAAAAAGGCAATATTAATGCTTGTTTAGTTGTTTCTTCAGTGGTGCAGTGTTGGCCTGCGCTTTTAACGTGGTCAACATGATGTTTTATTTTTACCTTAAAATTGTCCATTCCATAACCTTAGTAATCTAAAACGGAATACCAGAACATTTTTCCGATGATGTTCACTTGATCTTCATCTGCAACTTCATCTTCGTATTCATCACGGTTATAACTTCTGATAAGTAATTTTCCTTTCGGGCGTCTGTAAAGACATTTAAGACGCTTTAACCCATCCTGTTCAATTGCATACACTTTTCCATCAATAATTTTCTTATTAGAAATATCTACTGCTATTGCTGTTCCATCTGGGATAACTGGCCCCATGCTGTCGCCATTGGCAGGAAAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9-215 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000127.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 ............................ ACAGTGCTGTGATGATGATGGTCTCGCGGTTG 69 28 100.0 32 ............................ TCATATTTCAAAAAACGGTGACTATCATGTAA 129 28 96.4 32 ...........C................ ACATACCAGAACAACTAGAATAAGAACGGCTC 189 27 89.3 0 ..........A..........-C..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGTCG # Right flank : AAAAAGAGTTTTGCTTTAATGGCAGAACTCTTTTTTTAGGATTTTGTATTAGTAATTCTTATTGACGTGTTTATCTTAAGGAATATTTAGGGGATTGAGGACGATGTGCCCGTAGGAAAATAATGTAGCTTTTCCTAATAAATGTATCCGATCTCCATGCAATTCACACATAATGTCTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTGTTTAAACGGTCGCCCCAAAATGGAGCCAATACACAATGTGATGAGCCTGTGACTGGATCTTCTGGCACGCCTTTAGCGGGTGCAAAATATCGGGAAACAAAGTCAATCTGTTGTTCACCATGTGCTGTTATGACAACTCCCGGTAAAGGTAAAGCCGCTATTTTGTCAAAATTAGGTTTTGTATTTAGAACCTGTTCTGCGGTTCTGAGTAAACAAATGTAGCGATTATGGGAGACAAAAAGCTCGGATATTTTCTGGCCCAGTGCATTTTCAATATTTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1409-1549 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000127.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1409 28 100.0 32 ............................ CATTAAACAAATCGTACGCCACCCATAATCGA 1469 28 100.0 32 ............................ ATCCCCGTTCAATTGGCCGAGGATGGTATGCA 1529 21 75.0 0 .....................------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 91.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTAAACCAACGTAGGTGGTTACCGACAAGAAAAGCAGTTTCGGAGAGATTTATTTCCGTAGCAATAGATAATAAAGTTTCATTTGGAAGCCAATTATCTAATATAACAACGGCGGCTGGATTGCCAGAAAATGGGTGATCTGTGAATGCATCAACATGATAAATGGGTAATAAAGTCATTTGCATCTCTCTTAAACAGATTTAGCTATGAAAAGGGGAGATTGATATTCTTATTAAAAAACTACTCGCGTTAGTTTATAGCAACTATATGTAATAGAAAGGGGAATGAGCTGGGCGGTTTTAAGTTATTTAGTAAGTTTATTGAAGCATTGAATATCATTATGTTAACCATATACCGCCAGCTTTTTTTGACCCTTTTTTAGCAACTAATTATAACCTGTTGATTTATTTAAGGGATTAGCTTTTGCTTATAAAAAGGGTTTTCTTAGTTTTTGTCACTTTACCCTTTAATAATCAGCAAATTAAAGTTAGTATCTAACT # Right flank : | # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3544-3336 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIJ01000105.1 Photorhabdus luminescens subsp. sonorensis strain Caborca Contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3543 28 100.0 32 ............................ ATTTATCCGGCAGGGATGCGCTCGTTTTAAAT 3483 28 100.0 32 ............................ AGATGAATTAGTTGATGTACAAACAATTACAG 3423 28 100.0 32 ............................ GTAAAATATGTTGGGCATAACGACGTTGATAA 3363 28 92.9 0 .........................GC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAACGGAAAATAAAAATTCGGGAAATGATGACGG # Right flank : GCTTAAAAACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGTGGGATTAATTGCGCAGCCTTGGTGCCAGTAGCTGATTGCGGATGGATTCTGCTAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGTGCTTCAGCTAAATAAGTATGTACAGGTTGGCCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAAGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGGTCCAGAGAATATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTGCTTTAATTGCGAGCGTGACTTCATCTGTTTCAGGTTAGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //