Array 1 969-695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRJ01000120.1 Escherichia coli 2-427-07_S1_C3 e242707S1C3.contig.119_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 968 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 907 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 845 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 784 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 723 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGGAACCCAATAGTGAAATACAGCATCATTTTT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTATCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96201-95317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRJ01000009.1 Escherichia coli 2-427-07_S1_C3 e242707S1C3.contig.8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 96200 29 100.0 28 ............................. AAAATTCTCAAAACTCGATCAGGAAAAT Deletion [96144] 96139 29 100.0 93 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 96017 29 100.0 93 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 95895 29 100.0 93 ............................. TACGCTTACACAACGGGCGAATATTTTAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACCCAATAGTGAAATACAGCATCATTTTTT 95773 29 100.0 94 ............................. AAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCCTATATCTCTAACCGCATCGGGCTGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCG 95621 29 100.0 93 ............................. CGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCG 95560 29 100.0 93 ............................. GAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCG 95499 29 100.0 93 ............................. GAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCG 95438 29 100.0 93 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAA 95406 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG Deletion [95346] 95345 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================== ================== 11 29 100.0 81 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTATCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113393-111717 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRJ01000009.1 Escherichia coli 2-427-07_S1_C3 e242707S1C3.contig.8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113392 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 113331 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 113270 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 113209 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 113148 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 113087 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 113026 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 112965 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 112904 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 112843 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 112782 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 112721 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112660 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112599 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112538 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112477 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112416 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112355 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112294 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112233 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112172 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 112111 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 112050 29 100.0 32 ............................. ATGTAGGGGCAATCAAACGATTCTCTGCCGAC 111989 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 111928 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111867 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111806 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111745 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //