Array 1 84470-91857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMD01000002.1 Bifidobacterium pseudocatenulatum strain AM10-24 AM10-24.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 84470 29 100.0 32 ............................. CGACAACAGCGGTGCAAGGACACGTATTTTCT 84531 29 100.0 32 ............................. CCGTGGTGGGTAGGGTCATAATCCGTCCAGTC 84592 29 96.6 32 ............................T GCGTCACCGCCCAACGCGCCCGACGTGGTAGG 84653 29 100.0 32 ............................. GCAGAATACCCCCGTTGTCGATCGAGGTGAAC 84714 29 100.0 32 ............................. AATATGATGGCGACTATGCAGATTATGCGATA 84775 29 100.0 32 ............................. GGGTACGTGCTCAAAATATTGTTTTTGAGCTG 84836 29 100.0 32 ............................. GCCATGTCTGCTCACCTCCTAAAACAATGGGG 84897 29 100.0 32 ............................. AGCGTATCGCTGCCAACATGTCCAATATCACT 84958 29 96.6 32 ............................T GCGCTCAAGGTGCCGAAAGCGTCGAATCTCGC 85019 29 100.0 32 ............................. GGATATCACCGAACAGGAATCGTATTTTAACG 85080 29 100.0 32 ............................. CGGTTTATGGTCACGTCCGGCAATATCGGTGG 85141 29 100.0 32 ............................. CGATAGCGTCTTCGCTAATCCAACGTCACAGG 85202 29 100.0 32 ............................. CGTTGTTGACGGACATGAACGTTGGAAAATTG 85263 29 100.0 32 ............................. GCGCCCGACGTGGTAGGGGGTACGGTTTGGGT 85324 29 100.0 32 ............................. GGCTGAACCGTAGTGAAATATCGTTGTCGCGG 85385 29 100.0 32 ............................. GTAAGGAGCGTGCCGAGGCAATCCGTCGTAAG 85446 29 100.0 32 ............................. TGTTCGGCCATTTGGCGTCGTTGTTCTCGATA 85507 29 100.0 32 ............................. GGCATTGCAAACCCGAATCTGATTTATCCAGG 85568 29 100.0 32 ............................. TTATTGAGATCCAGATTTCCGCCATAGCCAGG 85629 29 100.0 32 ............................. GACGTGATTTTCGTAATCTCGATAAACATTGG 85690 29 100.0 72 ............................. GTGGAGATGGTGGCGCATAATTCCACGTCTCCCTGATAATCAGATCGGCAGATGGTATCTGCTCAGGCTCAT 85791 29 100.0 32 ............................. GAAACGGACGCCACCACCGCAACGTCCACCGC 85852 29 100.0 32 ............................. ATTGTGCGTGTCGGCACTCCGGCCGCTTGATA 85913 29 100.0 32 ............................. CGGATTCCAATACGCCGGACGATTTGACGGCC 85974 29 100.0 32 ............................. GTACTGTAGATGCCGTTATAGTCGTCGTCGGT 86035 29 100.0 32 ............................. GACGGACGTAATCTATTCGACGGAGTGATTCA 86096 29 100.0 33 ............................. TGCCGTGACTTCACCCTGCCCGACGTCGATTTC 86158 29 100.0 32 ............................. ATGGTACGTCGCGCCCCGATAATCGGTGACGG 86219 29 100.0 32 ............................. GGTGATAGCGCGACCATCCATATCGGCATGAT 86280 29 100.0 32 ............................. TCGTATGACCGTGCGACCATCGACCAGAAGTG 86341 29 96.6 32 ............................G TTTGACGTGCTGGGCACTCATACGGTCGGCGG 86402 29 100.0 32 ............................. GCGCACGGGGTGAACGGTGACACGCCATAGAT 86463 29 100.0 32 ............................. ACCGCTGTAATCTGCGACATAATATGTGGATA 86524 29 100.0 32 ............................. GAGAAGATTATTCGCCATTACGCGCTTAGGGA 86585 29 100.0 32 ............................. GCCATCGCCGGAATCAACGCCCAAGTGCAGCA 86646 29 100.0 32 ............................. TAAAAGTACAAGAAGAAATAAATCACCCAACA 86707 29 100.0 32 ............................. CAGCGGTCTTCAACTGCGCCTTGGAAGCGGAC 86768 29 100.0 32 ............................. GGACGTCACGAGAACATGATCCCGGCAAGCGC 86829 29 100.0 32 ............................. GCTCTCAGGTGCCCGCGCTCGACACCATGCTT 86890 29 100.0 32 ............................. CCGTATGGACGCGGAACTTACCGAAACCCTTG 86951 29 100.0 32 ............................. AGGTGGCCGGACGGCACCGCCGAGTGTGTCGC 87012 29 96.6 32 ............................T GCTCGTGCCTCAATGGCACGGTCATTACGTAC 87073 29 100.0 32 ............................. CGCCGAAATCCTCAAGGTTACCGCTCAGGCTA 87134 29 100.0 32 ............................. GTTCTGCACGCTCTCCCGTGACGCTGGCGTGC 87195 29 100.0 32 ............................. GTAGTTCGGGGACTATGCGGACAATAAAAGTC 87256 29 100.0 32 ............................. GGAGCCTGATGCGACAACATAGCGCCGATAAG 87317 29 100.0 32 ............................. GCATCATTTGGCATCACGAATTTTCCAACGTT 87378 29 100.0 32 ............................. ACGATATCCAGCTCGGCAACGCCTATGTCGAA 87439 29 100.0 32 ............................. ATGTCTTCCGGAATCGGAATAATGCGATACGG 87500 29 96.6 32 ............................G ACTCAATCGACTCACCAGCACAAGAGGCTATG 87561 29 100.0 32 ............................. GCCGCAGCCTGACGAGGCCGAGCCGGATCATA 87622 29 100.0 31 ............................. CCTTAGCCAAAGCCGTAGCGTTCTTGATCTT 87682 29 100.0 32 ............................. TCCAGTGCGAATGTGCCAGTCTCATTCCACTT 87743 29 100.0 33 ............................. GCCACCATCGACGCGACCGACAAGGCATCCAAG 87805 29 100.0 32 ............................. ACGGAATACTCGCCGAGCACCACCACGACCAA 87866 29 100.0 32 ............................. AGCCATGAGAACGACTTCACGAACGACAAGAT 87927 29 100.0 33 ............................. GAGGCATGACCATGGCCGGCCCCTTCGCCACCG 87989 29 100.0 35 ............................. AGTTATTATCTTACCACCTTCTCGTCGCAGTTCGC 88053 29 100.0 32 ............................. CCAAACTGGAGAGCGAACGTACGCCCAACATC 88114 29 96.6 32 ............................T CCCGGCGTGTCGCATTTCGCCATCACGCCGGG 88175 29 100.0 32 ............................. TCAAACATGGCGAATACGACGGCAAGCATACG 88236 29 100.0 32 ............................. ACGTTGACACCATCGAGCTGCGTACGTTTGAC 88297 29 100.0 32 ............................. AGTGAGCTTTTCATATCGGGCTGCGATCTTCC 88358 29 96.6 32 ............................T CCCCCCTTGCGTGCGTATTCCGCGAAGCACTG 88419 29 100.0 32 ............................. TTTGCAGTGACGTTGGCCGCTCCTACACCGGT 88480 29 100.0 32 ............................. AAGCATCCGGACAGGGTGCCGCCCGTGAAGTT 88541 29 100.0 32 ............................. TGGGTGGGGCTTGTCTTCACAACTCGGCCATG 88602 29 100.0 32 ............................. TGGATGCGGCCGACCAGACCCGACAGGATGCG 88663 29 100.0 32 ............................. AGTGTCCTCAGTTTGGGCAGGAGCAGGGGTTC 88724 29 100.0 32 ............................. GTCTTGCGGCATATCGGCTCACGTACCACCCC 88785 29 100.0 32 ............................. GGCGCGTAGGCTCCGGACGCTCCGCCTGTGGC 88846 29 100.0 32 ............................. GTCATCCGTCTGCGCGAGGAATTCCTTGACGT 88907 29 100.0 32 ............................. GAATGTCTGCCGTTGCATTGCTGCCTCCTCTT 88968 29 100.0 32 ............................. ATCGATGACACGACCATCACGCAGCTCGTGAG 89029 29 100.0 32 ............................. GTGTCGGCTGAGGTCTTGCCGCTGTAGCCCTT 89090 29 100.0 32 ............................. CAGTGCCGACCGTCGCCCTGTTGGACGAACTC 89151 29 100.0 32 ............................. GTCTGAACGAGTTTTCGGGCGTGTCGCAAGGC 89212 29 100.0 32 ............................. GACGAACACCAAGACACTATCGAATTACGAAC 89273 29 100.0 32 ............................. CTCGGCAACCAGCGGACCATGCAGCTAGCCGA 89334 29 100.0 32 ............................. ACAGCAGGAATGGTTTGACAAACTGGACGGCG 89395 29 96.6 32 ............................T TGTATTGCGGCGGCTTTATCTGTTTGGAATTG 89456 29 100.0 32 ............................. GTTATTTGGAGTTGACGCTTTTCGAAAACGGC 89517 29 96.6 32 ............................A CTTGCGTTGCGCGGAAATGTACAGCTGATTAA 89578 29 100.0 32 ............................. GCGCGTAAGGCCGCGCACTGGGATAACCAGAG 89639 29 100.0 32 ............................. GGCTGAACCGTCGTAAAATACCGCTGTCTTGG 89700 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89761 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89822 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89883 29 100.0 32 ............................. GCGCCATGGAATTTCATAATCGGCGCACGTGG 89944 29 96.6 32 ............................G GCACTGCTTGTGGACAATACGGTGGATAACGC 90005 29 100.0 32 ............................. GTGTTGGAGAGTGCTTGCGAATTGCTGGACAC 90066 29 100.0 32 ............................. CTTGTCACCGGCACCGCCAATGCCGAACATGT 90127 29 100.0 32 ............................. AAATACAACAAGGGCAAGCTGTTCGCCACCAT 90188 29 96.6 32 ............................T CTCAGCAATATAATCCGCCATGCCCGACTCAC 90249 29 100.0 32 ............................. GGGGGAGTTCGTGGTTTCCAACATTTCGTCCC 90310 29 100.0 32 ............................. CGGCCGGTCGGAACCACATGCACCAGCTCTCC 90371 29 100.0 32 ............................. TGGGTAGGCAAAGGCCTGTTCTGCATCGATTG 90432 29 96.6 32 ............................T ACCGTGGCGAGACCCTGCACATCAAGCGCCGA 90493 29 100.0 32 ............................. AGCATTATGACACAATCCAAAATCATGCACGC 90554 29 100.0 32 ............................. AAGATGACAACGATACTCATACATTCCATCAT 90615 29 100.0 32 ............................. GCGGACGCGCTCATGCACCGGTTCTATCGTCT 90676 29 100.0 28 ............................. ACAAAAGAACACACACACAACAGAACAG 90733 29 100.0 32 ............................. TGCAGGGCGACGACATGCTCCAGCTCATGGGA 90794 29 96.6 32 ............................T CGAATCGTTGACCGGTCAGGTCGATAACGCCA 90855 29 100.0 32 ............................. GGGGGATGCAGCCGATTCTACGCCGATGCGAG 90916 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 90977 29 100.0 32 ............................. TGGTCGGTGACGGGGCATTCGACGAGCGGCGT 91038 29 100.0 32 ............................. TCCTTGACGTGGCGCAACGTGGTGGCGCTCAG 91099 29 100.0 32 ............................. GCGCTCGCCTCCGTCAAAGGCACGGCCTTCGG 91160 29 100.0 32 ............................. CTGTGGATGTCGGCGTTGGAGTCGCCGAGAAT 91221 29 100.0 32 ............................. GGATTCACCCTCAGATGCGACGCGACACTGAA 91282 29 96.6 32 ............................A CTGTGGCACGACGGGCTGAAAGGCAACGTATG 91343 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 91404 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 91465 29 100.0 32 ............................. GTGGATGTCCGCGGAAACGTCCCTAATTTGGT 91526 29 100.0 32 ............................. CATGGTTCGCCATTCTCGTCGGTCAGTGTGCG 91587 28 96.6 32 .................-........... AAGGATACGCTGCCCATGATCGTCGGCACGAA 91647 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 91829 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 119 29 99.5 33 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCTGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //