Array 1 84023-86460 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJP01000002.1 Escherichia coli strain SC99 99...scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 84023 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84084 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84145 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84206 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84267 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84328 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84389 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84450 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84511 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84572 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84633 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84694 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84755 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84779] Deletion [84796] 84797 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 84858 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 84919 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 84980 29 100.0 37 ............................. CCATGACTNCCTGCGTCCTCTTTTGAATAATCGCGGC 85046 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 85107 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 85168 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 85229 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 85290 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 85351 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 85412 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 85473 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [85497] Deletion [85514] 85515 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 85576 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 85637 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85698 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 85759 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85820 29 100.0 32 ............................. GCATGACTATAAAAGCTTATATTTTGATAAAT 85881 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85942 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 86003 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 86064 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 86125 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 86187 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 86248 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 86310 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 86371 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86432 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ===================================== ================== 41 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112010-114557 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJP01000002.1 Escherichia coli strain SC99 99...scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 112010 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 112071 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 112132 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 112193 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 112254 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 112315 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 112376 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 112437 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 112498 29 100.0 32 ............................. GGCTACGCCTGCACAGAGTACAATGCGTGGGG 112559 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 112620 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 112681 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 112742 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 112803 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 112864 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 112925 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 112986 29 100.0 32 ............................. TGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 113047 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 113108 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 113169 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 113230 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 113291 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 113352 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 113413 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 113474 29 100.0 32 ............................. ATCACATCAAAGCATTAAGGGATGGAATAAAG 113535 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 113596 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 113657 29 100.0 50 ............................. CCGACGTGGGGATTTACTGNATGAATATGGGGAAAACGAACAATCTGTTT 113736 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 113797 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 113858 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 113919 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 113980 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 114041 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 114102 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 114163 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 114224 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 114285 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 114346 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 114407 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 114468 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 114529 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================================== ================== 42 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //