Array 1 68610-69297 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGZ01000085.1 Pseudomonas aeruginosa isolate 79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68610 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 68670 28 100.0 32 ............................ TGGCGAGCCCTGGAGCCGTTTCACTCTGTGAA 68730 28 100.0 32 ............................ TTCGGGTTGTGCGGGAGCTGGCCCTGCCAGTT 68790 28 100.0 32 ............................ TTATGCGCCAGTGCCGGTGGAGCCATAGGCCA 68850 28 100.0 32 ............................ TTCAGCAGCGACCCGGTCAGCAGCACGGTGCG 68910 28 100.0 32 ............................ CTCCTTGCCGGGCGCGGCGGCGAGCAGTTTGC 68970 28 100.0 32 ............................ AACAAAAACGCCGGCTCGAGGGCCGGCGTTCG 69030 28 100.0 32 ............................ AGAACGACGTAGATGATGCGGCGGGTGAACTC 69090 28 100.0 32 ............................ ACAAGAAACACACGCTTGCGGCGCTGGGCGAC 69150 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 69210 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 69270 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 78459-77825 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGZ01000085.1 Pseudomonas aeruginosa isolate 79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 78458 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 78398 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 78338 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 78278 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 78218 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 78158 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 78098 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 78038 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 77978 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 77918 28 89.3 36 ...................TA.G..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA C,C [77892,77895] 77852 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18321-16433 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGZ01000004.1 Pseudomonas aeruginosa isolate 79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18320 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 18260 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 18200 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 18140 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 18080 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 18020 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 17960 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 17900 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 17840 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 17780 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 17720 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 17660 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 17600 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 17540 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 17480 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 17420 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 17360 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 17300 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 17240 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 17180 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 17120 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 17060 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 17000 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 16940 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 16880 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 16820 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 16760 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 16700 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 16640 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 16580 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 16520 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 16460 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //