Array 1 19549-19250 **** Predicted by CRISPRDetect 2.4 *** >NZ_AENS01000012.1 Streptococcus pseudoporcinus SPIN 20026 contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 19548 33 97.0 33 ................................A CGCTAAGGCTGGACTCAAGCCAAAAATTTCGAG 19482 33 100.0 33 ................................. CATTTTGTAATTTAACATGTAGAGTAGTCAAAC 19416 33 100.0 33 ................................. GATTTTCCGTATCCTTCAAACGATACATCATTT 19350 33 93.9 33 ...................T............A TAGTATCTTCATCATTAGTCCCAAGATAAAGAA 19284 33 81.8 0 ...................TT....A.A.T..G | T,T [19259,19268] ========== ====== ====== ====== ================================= ================================= ================== 5 33 94.5 33 GTCGCACCCCTCACGGGTGCGTGGATTGAAATT # Left flank : CGAAATCTATTAGGGGAGAATTAGATTCTTACCCACCATTTCTAATTTAGGTGATTGTTATGATGGTTTTAATTACTTATGATGTTAATACGGAGACCCCAGCAGGACGTAAACGATTGCGACATGTTGCTAAATTATGTGTAGACTATGGACAACGGGTTCAAAATTCTGTTTTTGAGTGTTCAGTGAGCCCAGCAGATTTTGTAGAAATTAAAGATAAATTAACTAAAATAATTGATATGGAGTCTGATAGTGTTCGATTTTATCGTTTAGGTAAACATTGGCAAAAGAGAGTTGAAATTCTTGGCCGTGATGTTTCCTATGATCCTGATATGGGACTTTTACTTCTTTAAAAATCTTTTCGCGAACCGGGGTTACACATTAAATCCTGCGAGATTCGCGCATGAAATGATAACCATTAAGTAAAATTGAGATAACTTTACGAGTAAAAGAGATATCGTAAAAATTTAATTTTACTTTAAATAGTGTTTTTATGTGCT # Right flank : ATAGATATATATAGAAGTTTAATCATTTTATACAAATATGAGAGAAATTTTAAATTGTTCAGCTAATGACACCGTTTACATATGCTCCTCATCTTGCTATAATCATTTCATAATTAAAAAGCATGGTAACATGCTTTTTTATGTGAGGGTGTACTTGGGTATGGTAAATATGGAAAGAGAAGTTGGTCTTACCTTTAGGGAGAAATTGCGGCTTGAGGTTTTTGCTGGTTTTAAGAAAACAGCTTTGGTTATTGGTTTGAGTTATGTGGTGGTGCTGACCTTGTTTATTGTTTCGGTTCAGTATAGTCAATTGGCTGGCGGGACAAATGATATTGTCTCATATTTCAATACAGTCCACTGGAAGAGCGACCGGCTTTTTGCCAAACTTGAAGAAAAGGGTCTAAACCAATTCTTGTCAGGGCACCTGAGTGAGCGTGAGATGTTCAGAAAAGTCTATCAAGAGTCGACTCGTCTACCGTTTCGCTCGGCTATTTCCATCT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 135974-135279 **** Predicted by CRISPRDetect 2.4 *** >NZ_AENS01000018.1 Streptococcus pseudoporcinus SPIN 20026 contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135973 36 100.0 30 .................................... TACCTGGTATTCCCTAGACATCGGTATTTT 135907 36 100.0 30 .................................... TTCGTCTTTCCATTGCAGGTACAATTTTTT 135841 36 100.0 30 .................................... CACACAAAAAACCGCCCAGAATTAACTGAG 135775 36 100.0 30 .................................... GACTTGCTTCATAACAGCGAGTTTAAACTG 135709 36 100.0 30 .................................... TAGTAAATCAGCTTGGTAAAAAGATAAATA 135643 36 94.4 30 A............C...................... AGCTGGCGCTCAATCGTGTATCGGCAGAAC 135577 36 97.2 30 .........................A.......... TGATAAAATCTCAATGTGGTTGGAGTATGA 135511 36 100.0 30 .................................... CTTACGTGCTGAGTTTACTCGTAGCAACCA 135445 36 100.0 29 .................................... TCTTTTTTCATGATATACTTAATGAGTAA 135380 36 100.0 30 .................................... TGGATCTGGAGTTGGATCTGGAACTGGAGT 135314 36 86.1 0 .............A...........A.......TGA | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Left flank : TGAAAAGCCAGAAGTGAAATCAATGGTTGATAAGTTAGCAGCAACTATCACAGAATTAATTGCCTTTGAATATCTGGAAAATGAACTTGACTTAGAATATGATGAGATTACTGTTCTTGAATTGATTAAAGCTTTAGGAGTTAAAGTTGAAACAAGGAGCGATACTATCTTTGAGAAATGCCTTGAAATTCTTCAAATTTTCAAATATCTAAATAAGAAAAAATTACTTATTTTTGTTAATTGCGGCTCTTACCTTAATCAAGAAGAGTAAAAACAATTATTTGAATATATTGACTTATCGCAAGAGTGTGTTTTATTTTTAGAACCCCGTCAATTATATGATTTTCCACAATATATTTTAGATGATGATTTTTTCCTTTTAGATTACAATATGGTATAATAGATGAGGAAGTAACTTTAAAAAATGAATTCTTCGAAGTTGAGGATTTGTATTGGATAAATAGTGTGAGTATGAATTTCGCGGAAAAATTTTCTGCGAG # Right flank : GGTGATTTAACGTTATCAGTGATAAAGGCTTGTTGATTTTTCTATGCAAACCCTTACATTTTTTGCTATAATGGTAAAAAATAAGAGGAGACTGTTAATGGAGAAGACATTTTTTATGATAAAGCCTGATGGTGTTCAACGGGGATTAATGGGGCAGATTTTAAGGCGCATTGAGAGACGAGGGTTTAGAATAGAGCAACTGCAGATGATAAGACCAAGTCGCGAGCTTTTGGATAGTCATTACCAGCATCTAAGAGGTAAAGTTTTTTACCCTTCTTTGCTTGATTACATGATGAGCGGTCCTCTTTTAATCGGAATACTTTCAGGTAGTGATGTTATTGCGTCTTGGCGTACTATGATGGGAGAAACCAATCCCAAAGATGCCTTGCCAGGGACCATTCGTGGAGATTTTGCTCAGGCGCCGGAAGCTAATGCTCCGATGATGAATTGTGTTCATGGTTCTGATTCACTAGATTCTGCTCGGCGTGAAATAGAACTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //