Array 1 106596-105653 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKG01000003.1 Cronobacter sakazakii strain cro4191B1-2 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106595 29 100.0 32 ............................. TTCGATAATCCGTTTGACCGGTATTTGCGTTT 106534 29 100.0 32 ............................. ATAACGTGCGTGATGCTTTCCCCGATCTGCAT 106473 29 100.0 32 ............................. TGAGGTAAAAACTTATGCTCCTGAATTTCAGG 106412 29 100.0 32 ............................. CCGTTTTCGTTATCCACGGCGAAAACGACGGG 106351 29 96.6 32 ..C.......................... GTTCTGCTGGCATTTCACCTCCATTGTTCGCC 106290 29 100.0 32 ............................. GCGAGGTTGGGTTGATTGACCAGTTAATGCAG 106229 29 100.0 32 ............................. AGATCGTGAGGTGAGAAATTATCGTGCGGGCG 106168 29 100.0 32 ............................. ATTTGCTCGTGTGTCATTGGCTTGGGCGTCAG 106107 29 100.0 32 ............................. CTCCATCAGAGTGGCTCCGGTCGTACCGCACG 106046 29 100.0 32 ............................. TTTTTGGGCGGCAGGCTAAATGGCTGGGGAAT 105985 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 105924 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 105863 29 96.6 31 ............T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAA 105803 29 96.6 32 ............T................ TGGTCGAAACCGCGACTAACGGCGGTAAGACG 105742 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 105681 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134433-132878 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKG01000003.1 Cronobacter sakazakii strain cro4191B1-2 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134432 29 96.6 32 .C........................... GACGGCACTGACCTTGAGCAGGAGGTTCGAAT 134371 29 96.6 32 .C........................... TGAAAAAAAACCGGCTTAAAGCCGGTTTATTT 134310 29 96.6 32 .C........................... CGGCCGAGCTGGGAGGAACGGCCCGCCTGTTT 134249 29 100.0 32 ............................. TCCACGCAAACAGCCGGGGCCGGCGTCTGGTT 134188 29 100.0 32 ............................. AGCAAACCACTCGGCAGCTACTCGGCGGGCAA 134127 29 100.0 32 ............................. GCCTTCGAACGGCCCCTTGGCGCGCTACCGGC 134066 29 100.0 32 ............................. GGATCTGGTCAATTCAATTAAGGCGCAGGCCG 134005 29 100.0 32 ............................. CTCAGATGACGCGAGAATTTCGCGACGGAAGA 133944 29 100.0 32 ............................. TTATCAACGTGTTTACTCAACTGGCGCGCACA 133883 29 96.6 32 .C........................... TTTACCAGCAAAAGCCTTGTGAGGAGACTGAT 133822 29 96.6 32 .C........................... CGTGCTGGCTTATGAAAAACAGGATGGGGAAA 133761 29 96.6 32 .C........................... TGGGTCGCAGTAGAGCAAGACGCCAGCGGGGA 133700 29 96.6 32 .C........................... CTTGCCCTTGTCAATTTCACGCCCTGCCATCT 133639 29 96.6 32 .C........................... CCGTGGATGCCTCAGTCAAGGTTCCGCTGTCC 133578 29 93.1 32 .C......G.................... GTGGAGCGCAGCAGCACCGACCCAAACCGCGT 133517 29 100.0 32 ............................. CCTACGGTGCGACGCCGTATTTATTCAAAACA 133456 29 100.0 32 ............................. GCCGCGCCGTATTAACGTACCTGCAATGATTC 133395 29 100.0 32 ............................. TAGGCGTTTCAATTGGCATTTTTCTCACCCTC 133334 29 100.0 33 ............................. CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 133272 29 100.0 32 ............................. TTTTTGTTTACCGGTACTTTCTAAACGGCAAG 133211 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 133150 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 133090 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 133029 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 132968 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 132907 29 79.3 0 .C...........C...A..A....C..T | T [132880] ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCACAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //