Array 1 45157-46498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNNS010000004.1 Ligilactobacillus salivarius strain 1001295B_180824_C9 NODE_4_length_132382_cov_36.0585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 45157 36 100.0 30 .................................... AAAATCTCGGCAACAAGAGCCACGAACCCT 45223 36 100.0 30 .................................... TGGTGCATTGGATAATACCAAATATTGCTA 45289 36 100.0 30 .................................... GCCTAAATCATATACTCCTGCAGTAGATGC 45355 36 100.0 30 .................................... GAGTACTACACGCCCGCAAGCAATAACTCA 45421 36 100.0 30 .................................... CAATCAAACTGAATTTGATTTTATAAATTT 45487 36 100.0 30 .................................... GGCTACCTTAAGATAAATTTCACCTTCAAG 45553 36 100.0 30 .................................... AGCACGTTTGAACAAGTACGCTAAGCAACG 45619 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 45685 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 45751 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 45817 36 100.0 30 .................................... GAAATAAAAAAGCCCAGAGCATAAAGCCCT 45883 36 100.0 30 .................................... TATCACAGAAAGTTCTCCAGCAACATTATT 45949 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 46015 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 46081 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 46147 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 46213 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [46246] 46279 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 46397 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 46463 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 20 36 97.2 33 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //