Array 1 51-2960 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJAM01000016.1 Legionella pneumophila strain 2531STDY5467317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 ............................ AATTTTAACCATTTTAGGAAATCTGCCATCAC 111 28 100.0 32 ............................ ATTCTATAAGTTTGCGAAATATGGAAGAAGAT 171 28 100.0 32 ............................ ATACTTTCACAAAATTCACAAACATGATCATC 231 28 100.0 32 ............................ AACAGCTCCGTACACGTTAGAGTTACTGTCTC 291 28 100.0 32 ............................ AGATAAAATTGTCAATACTTTATATTTAAATT 351 28 100.0 32 ............................ AAAACAATATAGATGTACTGTCAATCATAATT 411 28 100.0 33 ............................ CTAGTATGTAACGTTAAACCACTGATTTTATAC 472 28 100.0 32 ............................ TGAACGAGTACGGCGAACCAAGATATTATTGC 532 28 100.0 32 ............................ AGTGACATATTAGAAACCATGGCTCCAAAGCT 592 28 100.0 32 ............................ TTCAAATTTGCGTTATAGGGCATTTTCTTTTT 652 28 100.0 33 ............................ AATTCAGCATAAAAAGCATCTTTAACGTTTTGC 713 28 100.0 32 ............................ AAAAAGAACATAGCCAGTTTACTAGGGCTTAG 773 28 100.0 32 ............................ ACATATACCAGCAGTACCAGCAGCATTTGATG 833 28 100.0 32 ............................ TATCAGACTTAAACGAATCTCACTATAAAACA 893 28 100.0 32 ............................ AAAATTGTTTTTCTGCTCAAGAGATGGGGAAC 953 28 100.0 32 ............................ TATGATGACGGCCTCCACGGAGAACTTGTTAT 1013 28 100.0 32 ............................ ATCACGAATGCACCCAAATTGCCTGTTAGTTA 1073 28 100.0 32 ............................ ATGTAGCGAAGGCGAGGTTCCATAATGTATAA 1133 28 100.0 32 ............................ CACTCGATGGGGTTTTCGGAGAATCATTCAGC 1193 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 1253 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 1313 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 1373 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 1433 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 1493 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 1553 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 1613 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 1673 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 1733 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 1793 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 1853 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 1913 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 1973 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 2033 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 2093 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 2153 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 2213 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 2273 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 2333 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 2393 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 2453 28 100.0 32 ............................ TTACCTCATGACTTGCTTTCTAACCTTTGCGC 2513 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 2573 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 2633 28 100.0 32 ............................ TGCTGGATTGTGCCCCAAAGCAAACAGAGACA 2693 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 2753 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 2813 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 2873 28 100.0 32 ............................ AGTGAAGCTATTTTTAACTGGGATAACATGAT 2933 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCAGCTTAGAAAATTCACAGAATTATTAGTTCCTTTAATAAAAGG # Right flank : ATTTTGCCGCTCTTTGAGAGATTGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCCCCTACTATAGTTTTCTTCAGGAGAATGAATTCTGGAGGAGGGAATGATTCAATTAGAGGAGTCAAAAATGATTCATATTTTGTACAAGCAGGGATACAGTAAAAAAGCGATTGCTAGAAAATTGGGTATGTCGATAAATACTGTTCGAAAATATCTTAAAAGTGGTTCAGAGCCTTATTACAAAAGGCGTGATAAAAAGCCATTAAAGCTTGACCCCTATAAAGCATATATTCAAAAAAGATTAAAAGATGCAACACCTCATTGGGTACCAGCTACTGTGATTTATCGAGAGATTAAATTGTTTGGTTATGATGGATGCAGCTCTCAATTAAGAGCATATATGCATACTTTAAGGTCAAAAAAAGAAGAGGTTATTGTTCGGTTTGAAACAGAGCCTGGACAGCAGATGCAGGTGGATTGGGCTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67094-68563 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJAM01000016.1 Legionella pneumophila strain 2531STDY5467317, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67094 28 100.0 32 ............................ TTAATAGTTCTATGGCAGGTACTGTATCTGTA 67154 28 100.0 32 ............................ TATTGGCGTAACTTTAAACACCATATCAGAAT 67214 28 100.0 32 ............................ AGTTTGCCGCTTAAAGATGCAAATGAAATGCT 67274 28 100.0 32 ............................ TAACACTGGCTTTTTAAGCACGGAAATGTAAC 67334 28 100.0 32 ............................ TTTAGGTGCAATTTCTACAGCCCTCAAAAACA 67394 28 100.0 32 ............................ AATTGACTTTATCCAAACTAAATGTTAGCCCA 67454 28 100.0 32 ............................ TATAACAGACTGCATCAACAGACTGTTAATTT 67514 28 100.0 33 ............................ CTATGATACACAAGGCAATATATTGCGTAGAGA 67575 28 100.0 32 ............................ TGAATGAATAAGCCTTACTTCCGTCTTTCAAG 67635 28 100.0 32 ............................ TTATATTCAAGTAAATATTAATTGCCCACTTT 67695 28 100.0 32 ............................ TAACATGGATAGAGAAGAATCTATACATACAA 67755 28 100.0 32 ............................ TGTCTAAATCTAATACGTTGGCATTTTATTTA 67815 28 100.0 32 ............................ ATGTGTTATGCAACCGGAAAGATTAAAGCAAG 67875 28 100.0 32 ............................ TAGCTGGATTGGCGCGTCTGGGCGGACGTCTA 67935 28 100.0 32 ............................ GCATGGACTGGATATCATTAACGCTGTTCACC 67995 28 100.0 32 ............................ TGCAAAAGTTTTAACCAGAGACGAAATACTAG 68055 28 100.0 32 ............................ CTGGAATAAGAATGTCCACGCTTTATCTCGAA 68115 28 100.0 32 ............................ ATTCTTTCCCAAGCATCTGTTGGCCTAATAAT 68175 28 100.0 33 ............................ CAATGTACACATAACTATTTATAATTTTAAATT 68236 28 100.0 32 ............................ ATATAGAAATAACTTCAAATCTATTAATTCCA 68296 28 100.0 32 ............................ TTGAGGCATAATTATATCTCCAATTAAAGTTA 68356 28 100.0 32 ............................ AATGAAAAATTTAGTGCTGAAACTAAAGCTTA 68416 28 100.0 32 ............................ ACATTATGGAAATTGCTCAAAGGTGGCTACGG 68476 28 100.0 32 ............................ ATTCACAGAATTATTAGTTCCTTTAATAAAAG 68536 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTATAACTATTTTTTTAAGATTTAGAGCAGA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //