Array 1 10733-10105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPW010000042.1 Pseudomonas cichorii strain LCYJ01 Scaffold42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10732 28 100.0 32 ............................ GTTCATCGCCCTGACGGGCGACGAGCCGGGGG 10672 28 100.0 32 ............................ ACCATGAAATGGCGCGCCCCGAGCTGATCGAG 10612 28 100.0 32 ............................ TGCACCACGCCCGGCGTGCCATCCGGGTTTAC 10552 28 100.0 32 ............................ AGGCAGCTCGCCTGATTTCAGATCTAAAGAGT 10492 28 100.0 32 ............................ GACTTCGGGGGGAATGACCTGCTCGGCAATGA 10432 28 100.0 32 ............................ TCAGACTGGGCAAGCGAAGAGGATAATGCCCG 10372 28 100.0 32 ............................ GACAAAGGAATGGCTTGCAGCGAACCCTGGCA 10312 28 100.0 32 ............................ AACCGCTGGCGGGGTGGTAAACGTGATGGTGC 10252 28 100.0 32 ............................ GGGATAAGAATGTCCCAGTGCTGATTGACGTC 10192 28 96.4 32 .A.......................... AACAGATAACCGTCAGCCCGCGCCCGACCTCG 10132 28 85.7 0 .......................C.TTC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.4 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GCCCTGTGGAATACAGGACTCAGGCTGCGAGCTAAAACTCTCCAACTTTTGGGGGGCAGTTCAGGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTCGACCCTCTTTTTTCAGACTCCGCTACCCCCTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACGGCTTAAGATAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCT # Right flank : GGGTTGACTCTCTTCATTGGAGGTGAATGGGGTACATCAAGAGGGTAGCTAAATCCTTGACTGGATTTCGGTCTTCAAAAACGACAAAGGCACCTTCCGGTGCCTTATTCACAAACAGGTCAGCTTGTCATCGCCATAAACCTGTCTGGCTCTACGATTGCTGGTTGCCCAGGATCCTTAGAGTCTCACAAGCCCCTTACGGGAACGAGACAATCATATGTATTACGCTAGCGTAATACAACCTTTCGCTATTATTTCCTGACGTGTGGCCTGTCATACCGCCTCACAGCCCTAGCGCCGATCGTACACCGACCTGAATAGCAGTGAACAACTCCTCAGGAAGAGGTATTGCTAGATATTCCCTTTTGCCCGTATGACGATTCTTCACTTTGATCCTATCCAAACGGGCGAGTGCAACGGTGTAAATCATGTCGCATTTCGCCCAGCACAAGGTCTGTGGCCCAGGTATCAACGACTCGAATTGGATATGGTGGTCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94978-96383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPW010000020.1 Pseudomonas cichorii strain LCYJ01 Scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94978 28 100.0 32 ............................ TCATCGGTCAGTTCCTGGCTATAAACGTTGAT 95038 28 100.0 32 ............................ ATGGACAAGGCAAACAACCTGACCGGCAATGT 95098 28 100.0 32 ............................ GCGGGCCCTAGACGATCGTGATGTAGAGCTTC 95158 28 100.0 32 ............................ ACGAACAGCGTAAAGCGCTGACCCCTAAGTAA 95218 28 100.0 32 ............................ GTTCATGGCCTGCCAAACCCGCGTTCGTGATG 95278 28 100.0 32 ............................ TCTCCACGCGCAAGCGGATACGGCTTCTGTGG 95338 28 100.0 32 ............................ TTCCATATCGCGTAATGCAAAAACGGCGTTAG 95398 28 100.0 32 ............................ TATGCACGGACGCATCAAATACCACTTTACCT 95458 28 100.0 32 ............................ TGATGGACTTATTGTGCCTATACTTCCCGCAC 95518 28 100.0 32 ............................ TCATCCTTGATCATCTGCAGGAATGGCTTGAG 95578 28 100.0 32 ............................ TGCAATCCGGTTAGAGATTGCAGGCTCTGTGA 95638 28 100.0 32 ............................ AAAACGGCTGATAGCCGCTACATACCTAGCCT 95698 28 100.0 32 ............................ ACTGTGCAAGCGCATTACAGCGACGGCGGAAC 95758 28 100.0 32 ............................ CATGAAAAACGATTCGGATATGTCGGCCTTTC 95818 28 100.0 32 ............................ TGTTGGCGCAAGGGCGAATCGTTGAATATCTG 95878 28 100.0 32 ............................ AGTTACATCACGCGCACTTAACTGGCTTGTGC 95938 28 100.0 32 ............................ AAGTGCGAAAGCTCGATGGGTGGGTTCGGCGA 95998 28 100.0 33 ............................ GTCTTCTTCGCGGCCCAAGGCAAGAATCTTCAG 96059 28 100.0 32 ............................ ACGTCAAAGTCAAGCGCAAATGCCCGGACATT 96119 28 100.0 32 ............................ CAGCCATGCGCTGGGCCGAGGCCGTAGAGGGG 96179 28 96.4 32 ............G............... ATCAGCACGGTGCGGCTTCTTGGCATCAGCCA 96239 28 100.0 32 ............................ GGCCGGAGGTGGCGAGTAACACCGGCCAGAAA 96299 28 96.4 30 .............C.............. ATGACCTGGGAAACGAGCATCGCCCTTGGC 96357 27 67.9 0 GC.....A...C.C.A.....-.CC... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.4 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCCGAGAGAGCCGAGGGGGATTGGGTGGGCGGATTATCCGCGAGACGGAATTGAAGACAATGCATCTTGTGCGACGAAAGGCTCATCCCGCAGACACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCCTATTTCAGGAAATGGAGCTTTTCCGGGATGTCATGTCGATGGGGACGACATCAGAAAGCACAGCGATGTCCCACAGCTTGCGAACATCTATCCAGAGGCCAGAAATGAACCCTTTATTGACCCTCTTTTTTCGCCTCAGATTCGTTCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : ACCAAAGCCCTCGTAATAACCACACTACAAGGGCTTCAGCCCGCATCAAAACCAGGGAACAGTTGCCGTAGCACTCAACCCATAGCTATTGAATGTCCCTTCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGATGCCGATGTCATCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 106084-105337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPW010000020.1 Pseudomonas cichorii strain LCYJ01 Scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 106083 28 100.0 32 ............................ AATTTACCTTAGTGACCGCGCCTCATATCAGA 106023 28 100.0 32 ............................ TTCCTGCAGCATCTTGACTGCCATGAAATCCG 105963 28 100.0 32 ............................ ACAGTTTGTCGCTGCAAACGTTACGTATGACG 105903 28 100.0 32 ............................ TTTTCCGGCGCCATGACCAGGCTGATGGTGAA 105843 28 100.0 32 ............................ ATAGTGGTGCCGTCACCGCTCGGGCTCAATTG 105783 28 100.0 32 ............................ CACTCCGGCGATTGATCGATCAACCACTTCGC 105723 28 100.0 32 ............................ AGGCACCATTTGTTCCAGGACGAATCCAGGAA 105663 28 100.0 32 ............................ AAAGAACGATCCCATCAGCAACATGGGTCAAC 105603 28 100.0 32 ............................ TTGCAGGCAAGGCGTGGCGGCGGATAGGCCAT 105543 28 100.0 32 ............................ AGCGCTGAGCGCCAGGCGAAACTTGAGGAAGC 105483 28 92.9 32 ............C....T.......... ATGTCGCCATCGTCCCAGTAGTAGAGGTCCAC 105423 28 92.9 31 .............C........C..... CCGTCCGCAGACATTCATCTAATCATTCATT 105364 28 82.1 0 ...........AAC........C.C... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGGATGGGAAGTCTAGAAGGTTTGTGCAGGATGCCTTCAAGGCCTTTCGCGAATGAGTTGGCTTGTGTGGGAGCGACTTCAGTCGCGAAAGCAGTGCTTCAAGCGATATATCTCTATCGGATGTACTCCCGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTCACCTCATATGCACCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGATAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CAATCAAATCCACCCCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //