Array 1 142122-140634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031156.1 Metallosphaera prunae strain Ron 12/II chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 142121 28 96.4 39 ......A..................... AAATAGTACTGACTTGATACGGCTAGGTGATAATAGCGT 142054 28 96.4 39 ......A..................... GCAAAGGCCTTTCCCACACTCTCCAAGGGAGTATGAAGT 141987 28 92.9 39 ..A...A..................... CTTACGTCTTGAAAGTACTCGATTATCAATTTAACAGGT 141920 28 96.4 41 ......A..................... GCGTCAATTCTCTAAAAAGAAAAGGCTAGCGTGAAGGGGAC 141851 28 100.0 41 ............................ TAAGTGAACCATGGGTATTCCCCCTCCGGGGGAACTTCGAC 141782 28 100.0 39 ............................ TCGGAAAGAACATATACATCCTCCCCGTGGTTCCCGGGT 141715 28 100.0 39 ............................ GTGTTTGTCCCCATCTTTTGATGGGGCAGCTGCTCCTCT 141648 28 96.4 39 ......A..................... TATACTTTGGAAAATCAGTATATCTCTTGTATCTTCTGT 141581 28 100.0 40 ............................ TCGATAGCGAACCTGATAACTTCGCTTCTATTCAGTCTGT 141513 28 100.0 40 ............................ ATAGACGTATCGACCCGCCGTATAGCATCAAGAAGATAGT 141445 28 100.0 43 ............................ TACACGACGCGATCACACTCACATGCCCGCGTGTCGCCGTTGT 141374 28 100.0 39 ............................ ATAACTCTATACGCTCTCACACGGCTGAGGTCGAGGAGC 141307 28 100.0 41 ............................ CCACCTTCACCCTCGCCTTACGGCCCTTTTCCTTCCTCAGT 141238 28 92.9 218 ......A....................T ACAACCCCCTATGTCAAGCACCGTGTCCATTTCAACCTTTAACCTCTTATTTTCCTGGAATAAACGGAACTAGGTGACTGAGCAAGAGAAAGGAATGATAATGCTTATTTTGGTAGAGACGAATTTCGTGAGGGGGCCTTAGACTGAGTCTCCTCAATGATGGGTCGGGACAGGGTCAAGTCATCACCGGACCCCCGCTTTTCAATTTTGACTCTCGT 140992 28 78.6 38 ....G.A......C.A.A...C...... TGGGGTTTGGTCGAATTAGTCCCATATGGTAGTTTCAG 140926 28 78.6 237 .....AA...G.C.........CA.... TCGGATCTTCTCCCTACATGACGTATTCCTGTGACCTTTTCAATCCACCTCACCTCCAATTTGCTGGAATATAGGGAACTAGGGGGACTGAGCATGAGATAGGAATGGTGTCAAACTTATTACGTAAAGGAGGTGATAAAGGGTGGAGGGCCTAAGCTCATAACAAGTCCGATATGGCTCCATGTGTCAGCCGTTCATCATAGGCCCTCTCTCTAATTCTGTCTCTTTCATTATTGT 140661 28 82.1 0 ..A.G.A....A.....C.......... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 17 28 94.7 63 TTGTAGTGATCCTTTGAGGGTTTGAAAC # Left flank : AGTTCTAGGGAAGATAGTGCCCTCTTGGCGACGTAATATGCGATGAGGGAAGATATCTCAGCGTGACTGGATCGCGGATCCTTACCTCCACGAAGATGTTTCTGAAAGAAGGTCGTGTACTTACCAACGTCGTGGTATGCCCCAGCAATATAGGCTGGGTCGGAGAGCTCCGGACGACTCCCTGAGATGAGCGAAGATGCAGTGGTTCCTACCTCATTAAGGTGGTCCGCGAGGCGCTTGTTGGGATGAGAACATAGATCGTCCGGTGAACATTCCATGGGAAGAGTTAGGGTTAAGGTTAAAAAAGATTATTTTATAGCAGTAATAATTTTCCTATTGAAAAATCGGCAGTGAAAGGGAAGAAGAAAATATATAGAGATAACAATATTATTTTGTACGTGGGTTCACCTCGGCGGTGAAAGGGAAGTTGAGGGTGGTTGATCACTGCCGAATTTGGGGTAAGGTTTTTTAGGGCTGGTTACTAGTAGTAATAATAGCGT # Right flank : TCGGATCTTGTCTCCATGTGGCATAGGCCAATTACCATTTTAATCTTCAACCCCTCATTTTACTAAGGAAATGGAACTAGAGGGTTGAGCTGAAGAAAGGAGTAGCGTCAAACTCATTGCGTTAAGGAAAGATGAGAAACAGCCCCAGTTCGTAACAAGTTAGTCATGGATCCGTGCCTCGGTGTCCATCACTCTCAGTCTGTCTCTAAAGATCTTGAGGCCTGAAACTAGGACGAATTCCCGAACATTATGTAGGCTATTTGTATTAACTCTCTTCACTCTTCATATGAAGTAACCTTTACCTGGCCTTCAGGTGGAGACTCAAGATTCCGACATATCCCCTCAACAATACCCCTAGTGTAGTCGGCATCTAAGCCTCTGACTTAACCCAGGTAAGAACGGCCACTCTCTCAACTTTGAGACAGTCACAAAAAGGTTTATTTTGTTGCGGGTACCAGCAATTTGCGGGTACCAGCAAATGTTCGTGTACGGAGTTCCCA # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-2.38, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGTGATCCTTTGAGGGTTTGAAAC # Alternate repeat : TTGTAGAGATCCTTTGAGGGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 143338-143786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031156.1 Metallosphaera prunae strain Ron 12/II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 143338 30 93.3 37 ...............AT............. TGCCTCCAGAGGTGGGAAGCGTACGCAGAATAGCCCT 143405 30 93.3 40 TC............................ AAGTACCTCAGAGTTCCGTTCGGTGACATGGCTATGATGT 143475 30 100.0 38 .............................. TTGGTTTTTATGGTCTCAGCTACTCTTAGTGTGTAGAG 143543 30 100.0 37 .............................. ACGTGCAATCAAGTATTGGTTCAGTCGTAACAGGGGA 143610 30 100.0 39 .............................. TCTTCAATTTCTCCGAAATCTTCATCACAATGGACCCCA 143679 30 90.0 48 .........C......G............T GGGATCCCCGCTTCCCACACTCACGACCGGGGGGGGTGTAGACGTGTC 143757 30 96.7 0 .........C.................... | ========== ====== ====== ====== ============================== ================================================ ================== 7 30 96.2 40 GTTTGTAGAGATCCTTCGAGGGTTTGAAAC # Left flank : CACCCTCGAGGAGTACGCTTCCGATCTGCTTCACCTCGAGGAGGAGCTCAAGGCAGATCAGTCAAAGGCCTGGGAGAGATATCTGGGAGGCCTGCTACTGTTCTCATGTCTCATAGACTCAGACAAGCATAGCGCCAGTGACACATCCTTTCTTCCCCAGAATCCCCCTTCACCCTCACTGATTACCGAGTTCATATCCTCGATCAAGAGTAACGATAGGATGGCTGGGATCAGGGAGAAGCTCAACTCCCTTGTCTCGTCTACTCCGGTTAGCCGGACGGTAACCTTGATTGCCCCGAGCGGATCGGGGAAGACGCTGTCCGGCGTTCTAACTGCACTCAAGATGGGGAAGTCGAGGTTGATCTATGCTCTTCCCTACATTAGTATTGTTGAGCAGGTTCACGACGTGCTCTCAAGGACGAGGATGGACCCGCTCAAGTTCTATCATCTATACTAGGGTAAGGTTTTTTAGGGCTGGCTATCAATAACAAATAAGAGCG # Right flank : CATGCTTTTAGTTAAACTAGAGAATGGGCTCAGGTGATGAATTACCTGGGCCGACCCATCAAGGGTAGCTTTAGAAGCTGAGCCTAGATCCCTATTTAACTCCTCTTCCTACCAAAATAAGCTTACTAGTTTTCCCTGTGCTCGGTTTTCCCAGTTATGTTCACTTCCTAGCGAACTAGTTTCTAGCATTCTTTAGAGATTAATAAAGCAAAGTTAAAACAATAATATCTCGAAGTCTATCAATAAGTCTGTAGTGATCCTCAAGGTTTAAAACCCTAGAGAGATTAATAGGATAACTAGTCATTGGAGAGCCTGGCATCAAGGCTTATTTTTTGGAAGTCTAAATAGGTGATGGGGCCCCCGGTCTAACTCTCTGCCAACAGCTGCCGGGCCCGGGAAAACTCTTGATTAGGCCCCCGCTTATACGGACCCTCCAGCGTTTTGAAACTATCACATTTTGTTATGCGTCCTTTGCTTCCTTGTCCGTAGATCCTCCCGAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTCGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 171231-165206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031156.1 Metallosphaera prunae strain Ron 12/II chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 171230 24 100.0 40 ........................ TCTAGGGAGACTTGGTCGTTGAAAGCCGTTGATGGGTTCA 171166 24 100.0 43 ........................ CTCCTCCTATAGAAAACGTCCGAACGACAACCTTGTCAGTTAA 171099 24 100.0 40 ........................ AGGCAGTCTCGATAGTCAAAGAGGCGTTAAAGAGGGGCAA 171035 24 100.0 40 ........................ ATATTTACTCCACTAAAGGCTTTGCCCATAATGAGCGCAG 170971 24 100.0 40 ........................ TTAACTGACAAGGTTGTCGTTCATTTCTATGGACGAGGAG 170907 24 100.0 40 ........................ ATACCAGCAGAACGTGAGATAATAGTCAACTATCCACATT 170843 24 100.0 39 ........................ CCGTAACAGTCCTTCCTGAATATTTCTCTTCTATACTCT 170780 24 100.0 40 ........................ CATCTATAATGAGAACGCTAGTTCCCCACTTTTTCGCGTG 170716 24 100.0 35 ........................ CTTATTTCTTCGCGGTTTATAATGGACCCGGAACG 170657 24 100.0 41 ........................ TATCTTCCTGACGTAGATGATGCAGTCCAAACAATAGATAG 170592 24 100.0 40 ........................ TGTACCAAGCCTGGATGGGTAGACCAGGACCGTGATCAAT 170528 24 100.0 39 ........................ TCTTTCATTGGGTTCGTATAAAAATCCTTGACCTAAGGA 170465 24 100.0 43 ........................ CAGACAATACGATCGAGTAGGGGACTGTGTGTAAAAATGAGGG 170398 24 100.0 40 ........................ TGTACACTTCCTTCTTCTTAGGCAAGGTTATTTTAACCTT 170334 24 100.0 39 ........................ GGCGGGTGAAAGAACTACTCGAGAAAGAGAAAAGAAAAA 170271 24 100.0 41 ........................ AGTATCATTCAGTGGAAAGTTGTACGGTATGAGGAGTCATA 170206 24 100.0 39 ........................ ATTCCACGATTTTAACCTTTACAGATTCCCCATATCCTG 170143 24 100.0 40 ........................ CCTAGATCACGGGGCCAATCCAAACGTGAAAGATCTAGAT 170079 24 100.0 41 ........................ TCAAAGGTTGCTGAGGACTGTTATAGGGATGCACTCTCAGT 170014 24 100.0 39 ........................ TTGATCGTTAAAAAGTAACGTAAGACGTTTCACAAGAGA 169951 24 100.0 40 ........................ ATATTGATTATGAAGACTTTAAGAAAGATACCAATTCTAT 169887 24 100.0 41 ........................ TAATTCCTCTTTGATCTCTCTGGATTCTTGTTTTGTTGAAT 169822 24 100.0 40 ........................ TTATTTCGAGTTTCTCATATATCTCCCACGTTATGTCAGA 169758 24 100.0 39 ........................ CTCTCGTTAAGGAACTTACTCAAAGCCCTCAAAGACGAT 169695 24 100.0 39 ........................ TTCAACTCCACGATTGATTTGATAATTATCAAGGCTTTT 169632 24 100.0 43 ........................ AATGAGAGAGTCAGGCCGAGGCCCCTCATTACATCTATCATAT 169565 24 100.0 39 ........................ ATAAACCAGCGTTTCCCTACAAGTATGAGGCAAAGAACA 169502 24 100.0 43 ........................ AGGAATGAAGTGAGTTGTCCGGGTGGTACACCAGTCAAGTCAG 169435 24 100.0 35 ........................ GCTTGTTGCTCAGCCATTGCGTAACCTCACCCCAC 169376 24 100.0 38 ........................ TGGACACGTTGGGAAGGCCTTGCCACGCGGAACTCAGA 169314 24 100.0 42 ........................ AGAGACTGGACCATAAAAGGAGTTCCTAAAGCGGGTAATAAA 169248 24 100.0 38 ........................ TAAAGATTGACCTTATTACTCTTGACAAATATATCCCG 169186 24 100.0 40 ........................ AACTTTGAAGTCAGAGTTTTCTGCTTCTTTTATTACTTTA 169122 24 100.0 39 ........................ TACATTACCTTGATTATCCATTGTTGCGTTTAGCTGAAG 169059 24 100.0 41 ........................ TATGATTTTCTCGCTATTCACCACCTCCTTGATATACTGTA 168994 24 100.0 40 ........................ TCCATATAGAGATTTCTAATAATCAATTGGGGATAGATAT 168930 24 100.0 37 ........................ ACGTTGAACCAACGTTACCCCCCGCCGTCAAAGACGC 168869 24 100.0 38 ........................ TCCACGGAGGGGTGGAGAATGAAACTATTCGAAGGGAC 168807 24 100.0 39 ........................ ATGAGATCTACCTCGAAAATACGAAGGCAGACGTTGAGG 168744 24 100.0 39 ........................ GAAAATCTCAAAGACTTGTTAATCCCATCAAAAAAATGG 168681 24 100.0 37 ........................ ATATCGTTATCCGCGGTCATTCTCACGTGAGTGATTG 168620 24 100.0 40 ........................ ACGGTACGCCGTCGCCGACGCGGGGGATACCCTGTATCAG 168556 24 100.0 38 ........................ AATAGTCTGCGTGGAAGTAAGTGACCTTCACGAACTTT 168494 24 100.0 40 ........................ CGTGACCCCGCTCGTGCGGTCACGGCATGCTAGGAGGAGG 168430 24 100.0 38 ........................ AAATTTTTAGAAGAAATATACGAATGTGTAGATAAAAA 168368 24 100.0 41 ........................ TTTCTTTGTTCACGATCACTAACTCTAAGATATAATCGGGG 168303 24 100.0 40 ........................ CAATAAAATCGTGATCAAAACGTTTTTGAATGAACTCATG 168239 24 100.0 41 ........................ CTCATCAAGAGGCATTATTTTCTCATCAAAACCGCCAAGAT 168174 24 100.0 43 ........................ AAAAATTATTCTTGTTGGATCTGTTGCTGCTATATTGGGTGTA 168107 24 100.0 41 ........................ TTAGTAAGTCCCCTAGGGCATGATCCCAGAAATAACCACCA 168042 24 100.0 43 ........................ GTAGATTATCAATCTTACCCAACGGTCCAAAGGAACTAAGTAT 167975 24 100.0 40 ........................ TTTATCCTTAGGTATCTCATAGAGACTGGTTTAGCTTCGA 167911 24 100.0 39 ........................ GCTATCAAAAGCTGGAGAGCAAGTAGCGACCTTTCTTTT 167848 24 100.0 39 ........................ TAATCGGTTAAACCGCTTTTGAAAGGAAAATAGAATGAT 167785 24 100.0 39 ........................ ATCCAAATCATTAGAATTAACGATAATTTCGGTAAGGAT 167722 24 100.0 40 ........................ TACTGGAATCCGTATATAATTGATTCATTTAGTGGAACCA 167658 24 100.0 41 ........................ AACTTCCTACTTAGACCGCGAATTAGCGATCTAGGAATCGA 167593 24 95.8 38 .............G.......... AGTCTAACCCCCTTCTGTCCCTGATATTTTCCTCTATA 167531 24 100.0 43 ........................ TTCTCAATTAGTCCACCCCAAGGTATCGTGAGAACCATAGTCG 167464 24 100.0 37 ........................ AAAATTCGACGAGAAAATACAGAGAATCGCGAAGGCA 167403 24 100.0 40 ........................ CTCCGCGAATTCTCTAAGTTTCGGAATAGCGTTGCCCTGA 167339 24 95.8 43 ..........G............. ACAAGCCAAATGATGAAGTTACTACTACTAATACTACTACTAA 167272 24 100.0 39 ........................ TTGCCATCGCCTCAACTACTGCCAGACCAAATGTCTCAC 167209 24 100.0 41 ........................ TTCAGCTTAAGGATGACACTCTTGATATGTTGAGTCTTTCC 167144 24 95.8 39 .......C................ GTAGGTGTGAAAATCACTATAGTCATCATACAGCCTCAT 167081 24 100.0 39 ........................ TGCTTTGTACGTAAAATGACGTGCTTCTCCTTATACCAA 167018 24 95.8 41 .............G.......... TGCACCAGTCCCTAGTGTAAACCCTTCCAATATTGACGTCT 166953 24 95.8 42 .............G.......... CTTCATATCTTCAGCTTCAGGGTACCAGAGACGAATCTCACC 166887 24 95.8 42 .............G.......... AGTAAAATAGGTCCTGCATTTGTACTAGGCGTTACGAATAAT 166821 24 95.8 39 .............G.......... AGTATCGCAGCGGGCGGGGATGTCGCCGAAAAATCTACG 166758 24 95.8 37 .............G.......... GTAATATCGGTCAATCCCACGAATGTGGACGTATACA 166697 24 95.8 42 .............G.......... CGATGAACTGAAGGCAACGCCAAAACAACTGTTCAGGAAAAA 166631 24 95.8 40 .............G.......... AGAGAGTCTAGGAGCAGGGATACAGAATGCTATAGGATCC 166567 24 95.8 41 .............G.......... TATTGCGGACAAAGTTCAAAGTCATATATTTCTTTGCCCCC 166502 24 100.0 40 ........................ ATTCACCCAGGGACGTTAATGCCGAATTCTATGAGGACAG 166438 24 100.0 39 ........................ TTCTATAGTCAGGGGCATTTGGATTTACCTTAAGTTTGA 166375 24 100.0 42 ........................ GAATATTGCAATTTCTGGATTATGAACACTGGAAAGTGATAG 166309 24 100.0 38 ........................ TCGAAGTCCCTGTACCACCTCCACCCGTGCTAGTTCCT 166247 24 100.0 37 ........................ CCCTGATCATCTTTAGCACTCATATGTTATCATGATA 166186 24 100.0 39 ........................ ATCCAAGAACTCAATCAACTCCAGCGTATTTTCCCCAAA 166123 24 100.0 40 ........................ ATCTTCCTCACCCTTATGTCCCAATGCCCCGAATTAGACC 166059 24 100.0 39 ........................ GTAGCGTTTGAGGAACTAACCAATGCGACGATACAAGTA 165996 24 100.0 40 ........................ GCACAATTGTTGTCGGTAAAGGAGAATGGAACAAACATAG 165932 24 100.0 39 ........................ GCACCTCCGCCTCCCCCACCTCCACCTGCTCCGATTGCT 165869 24 100.0 37 ........................ TAATTTTCTCGGTTACGGTACTGCCACTACTGGCAAT 165808 24 100.0 40 ........................ TAAGGATGAACCTAATTGCTCAAGGAGAATAAGATCCTGC 165744 24 100.0 40 ........................ GATAATGTAGCGTATATCCTCAAGCAGTTCTATAACAGAA 165680 24 95.8 40 .............G.......... ATTATACTACTGTTATGTACTGTACTGTATATATTCCTTA 165616 24 95.8 39 .............G.......... ATCTTTTCCACTGTATATTGACCATATCTTCTATCTAGA 165553 24 95.8 42 .............G.......... TAAAGGAATGAGCTCTTGAATGACAAAACCCTTCGTTATACG 165487 24 95.8 39 .............G.......... TCACTTTGCTCTTTATCGCATCTCCGACGTCGTTGAGAA 165424 24 95.8 41 .............G.......... CCTTATGTAACTTGATCCATCTTCTGCACAACCTAGATCCT 165359 24 95.8 43 .............G.......... CTCATGGTTCCCTGTCTCTCCTAGATGCATTAGACCAGACCCT 165292 24 95.8 39 .............G.......... TATCATAAGAACATAGTAGAGAAGGCTCAGGATTACGCA 165229 24 95.8 0 .............G.......... | ========== ====== ====== ====== ======================== =========================================== ================== 95 24 99.2 40 GTTAATCTTCTATAGAGTTGAAAG # Left flank : CGTCGTATTCCCCGTGAACTCCAACTAATGCATCGCCTCTACACAATTCTTCTACCCACTCCGGGGGAAACTTTGTCGTGAACTCCAACTAATGCATCGCTGCTACTTGACAATATGCTCGTGAGGTTCAAGATGATCATTAAGGCAGTGAACAGGAACCTCGAAATAAGAATTGCTCAGTAAAACTCGTTCTGTAGGACGCGGTTCACTCCTGGAATTTGTAACTTTATAACCACACTATTAAACGCAGCTAATTAATTGTGTAACTAAAAATTTATCTGAAAATCTTTTCCTGGGAGCCATCATGAAAATGCGTCGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAAATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTGTAAGAAATAAGATCATGTTAATCTAGCGGTATAAAGAGTGTCA # Right flank : TCCTAGTATAGTACTTGAAACTAGGTGACCCTTAGATCGCTTAGTCTTATGTGGAGCTGATGCGTAATGATTGATTACGTAACGCTCTCCCTACGAATATTTCTAATTGACAAACTACACCATTTTTAAGTTCTTCACACTAATGGGACTGAAATCTCATAGACCCTATGCCTGACCTTCCCTAACATGACCTTGATCAATCTTGGAAGAGACTGAAAGAACCCCTTTAAGGGCCTAGGTTCACTCCTCTGTTCCTTTAGAATTGAGAAATACAGTACCACCTTTACCAAGTCTAGCAGATCTCGATTTCATGACTCTAAACTTGATTGGGAAAAAGTTAAGGATGGGGAAAATTTGCTGCTAGCACCTGATTTTCTCTCTATGGTCCAGTGTTGCCCTAGGTTAATGGGGGGTAAATGTGTCCTAGAGTTTTCCTCACGCAGTACGGTGTGAAATTCATGTACAGCAACCAGTCAATTACTGATCCTTAAGGGGATTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 178974-174682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031156.1 Metallosphaera prunae strain Ron 12/II chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 178973 24 100.0 43 ........................ ATTTGCTATATACATAATATAATGTATATGAGTTTGCAGATCT 178906 24 100.0 41 ........................ TTTTGCTAGAAGGCATCATGCCACCAATTGCGAAATAATAA 178841 24 100.0 39 ........................ TTGCTTCTTGAGAACTGAACGACAAAGTAAGTCTCATCA 178778 24 100.0 41 ........................ CAAAATATACAAACAAACGGTGGCGGAAGGATAACACTAAG 178713 24 100.0 41 ........................ ACAAGTCCAGCGAACTCAGGGACATCCTGGTTTCCAAGGTT 178648 24 100.0 38 ........................ ACCCAGTCGTGGTGTGAAAAGTATTTGTAACGCGTTTC 178586 24 100.0 38 ........................ TTGTTTCTTGCTGTTGTGTCGTTTGTTGCGGTGGTGGT 178524 24 100.0 39 ........................ ACTCGTCCTAAAATAAACGTAGGTTCTGACGATAGAAGT 178461 24 100.0 38 ........................ AACTGATCCCTCTTTCAATTACCAAGAAAAAACTTACA 178399 24 100.0 36 ........................ GCACTGAAAACGAGCGAGGCATCTCTGCCCCCACTC 178339 24 100.0 38 ........................ ACTGAGCCCTTAACCGGGGAGTTAACGGCTAAAGATGG 178277 24 100.0 40 ........................ AACTACTATAGCCTAGCGCCACTTAGCGTCAAAACGAACT 178213 24 100.0 42 ........................ TTGTCGTGAATTGTAATTCTAACACTAACTTGAATCTCTCAC 178147 24 100.0 41 ........................ AAGCAAATACCTAAGCTGTTTGGAATCAGCGTCTGGATATG 178082 24 100.0 37 ........................ AGAACGCCGGGCGCTTTATTTTCTCTAAGAATTCACG 178021 24 100.0 40 ........................ CTCTACATCATCCATAGGGACCGCCTAGAGGGGTTTATAG 177957 24 100.0 41 ........................ AGATGAAGGAACTTTCATAATGGTATCTCCTCCATTACTTT 177892 24 100.0 41 ........................ ATAGAGTACACCTGCCCAGGGTATTCCACTGCTATATTCCC 177827 24 100.0 41 ........................ GGTACTTCGTTACTGGGTCATACTCAAAAGCAGTGTCCCCT 177762 24 100.0 38 ........................ GGATCCTTCATCATGGGTCAGAGGCTCCGCGGGGAAAA 177700 24 100.0 37 ........................ GTTAGCTCTGAAGTGTATACGTAATAGTCATCAGGTT 177639 24 100.0 42 ........................ ATACTGATTTTTTATAAACAAATAATTCCTTTATTGTAATAT 177573 24 100.0 40 ........................ TTATTACTGGTAAATTGACCAATTAGGATATTTGTAGTTC 177509 24 100.0 37 ........................ TGAGGAGGATGAGCCCGACGTATATGAGGCTAGGAAG 177448 24 100.0 39 ........................ CAACCTCAAGAAGCGCCTCTAGAAACGCCCTTTTCCTGT 177385 24 100.0 38 ........................ ACTACGTCTGCTCGAAGAGCGGTAGGGCCATCCCTCTG 177323 24 100.0 37 ........................ AGGTCCTGCTGAGGCATGGAGCTAGGCCAGATCTGGA 177262 24 100.0 41 ........................ ACAAAAAGTGAACCAGCATCCCCACAAGAAAGGATCCTACT 177197 24 100.0 40 ........................ GTCAAAAGTGGATAAACTTCCTCAACAATTATAGTTTCCT 177133 24 100.0 43 ........................ TATCGCAAATTGAGAACTCCTTGCATACCTCTTCACTAAACCT 177066 24 100.0 40 ........................ TACAGAACCTTGCAAGAATATGTTAAGAAGGGTGTAATAA 177002 24 100.0 39 ........................ ACTGGTCCCTAGGCAGTTCAAGTACCTCATTGACGTTAC 176939 24 100.0 41 ........................ AACCATACCTATGTGCCACCACTCATGGACAAATGATTTTT 176874 24 100.0 39 ........................ ACGTTAAGGCACTCCGTTATTCGTTGTTTTGGTTGAAAG 176811 24 100.0 40 ........................ AGAAGCCTTTTTTATTCTTTAGAAATGTTTGAATGAACAT 176747 24 100.0 39 ........................ ATACGAGGAACTGAAGAAGGCTATAAAAGAGCAAGGATT 176684 24 100.0 41 ........................ GCCCTCTCTCAACTCAGTAACTCTCATCTCCCTCTCAACTT 176619 24 100.0 37 ........................ GCTAAATCGCTGACCTCCCAATAAGGCCCAGGCGCGA 176558 24 100.0 41 ........................ TGGAAAGATCTCCCTGCTATGTACGTCTATGAGCTCCGCTA 176493 24 100.0 39 ........................ TCTGCCCCTCCACTTGAACCACCTGAAACGCCATTTCTG 176430 24 100.0 37 ........................ GGTTGAATCCAGCCCTCAAAGTGAGGGCGTGAGAAAA 176369 24 100.0 38 ........................ CCTTTATTCTTGCTATTAGATCGAATAAATCGCTCGCG 176307 24 100.0 42 ........................ TAAGTGGACACTATTGATCACCTCAGGGCTAGATATATGCCT 176241 24 100.0 45 ........................ TCATTGAAATACTCAGCAACTGTATCCCTTAACTCTTCCTTATTA 176172 24 100.0 44 ........................ AGTATACCTGGGAGTGCTGATGTAGATGCGTCACCGACCATGTT 176104 24 100.0 40 ........................ ACTACGGGTCTCAAGGTAGTCGGTGTTCTTCTAGTAGCTG 176040 24 100.0 41 ........................ ATCGTACTTTGCGCTGTACCTTATGAACAGTGGAATGTCCC 175975 24 100.0 41 ........................ GTAAAGGGGTTGTGTTTTACGTTTTGAGTGGTGTTTACGAC 175910 24 100.0 39 ........................ CTAAACATATATGAGTTCATTTTTTCCGACTTTCCTAGA 175847 24 100.0 39 ........................ TAAAGTGATAGAATAAAAGCTATTATTCCAACTATTTCT 175784 24 95.8 40 .............G.......... CCTTGGCAACTCGGACCCCCTCAAGCGTACGGAAGAGATT 175720 24 95.8 40 .............G.......... AAACTCTCGATCAAGACATTTATTGTCTCTTCATCTATCT 175656 24 95.8 41 .............G.......... TCTAAGGAGGATAAAGAGGAAGATTGGGCATTTTGTTCTGT 175591 24 95.8 40 .............G.......... TTAGTGTTTACGTATGCTCTTTGTTGAGCTAGTTGTTGAT 175527 24 79.2 32 .............G.....TTC.C GAGGATGATTATAAGCTCAGGGAGAAGATTGT 175471 24 95.8 38 .............G.......... ACGTAACCTGTAGATGTGTAACCAGGCTCAGACGAGAA 175409 24 95.8 41 .............G.......... GAACATCCGCCTTATCGTTATCTTTCTTCTTGAACAGGAAC 175344 24 95.8 39 .............G.......... TCAATTTATCATACCTACCTAGTCTTACTAAAGTACAGT 175281 24 95.8 37 .............G.......... GTTGGACTACCTGAAGTAATCGAGCTCAGTGGAGGCA 175220 24 95.8 40 .............G.......... GTTTTCACGTGATACTTTATGATGTCGTTGCATCTATCGA 175156 24 95.8 41 .............G.......... AGGACATAAGGCCTTGGCCATGGTCTCAATATCCCATTCTT 175091 24 95.8 38 .............G.......... GCACTGACGTTTACTATCTGCAGCCCACTTGGTGACTG 175029 24 91.7 40 .............G.........T ACACTGCCTTGATGAGCGGGATGCTTCCAATTCTCCCTCT 174965 24 95.8 41 .............G.......... AGGATTCTTCTAAATGCTGTGACAAATGTTAGAATTAGATA 174900 24 95.8 41 .............G.......... CAACGAAGAAAGAGTCGAGAAACTAAGCAGAGTCGAGCACT 174835 24 95.8 40 .............G.......... TATTCGTCGTACGATTCCACTTCAACAGAGTTCACAATAA 174771 24 95.8 42 .............G.......... AGTTGCTCTAGCAGGAGAAGATCCTGCTCTTCGATTTTGAAT 174705 24 91.7 0 G............G.......... | ========== ====== ====== ====== ======================== ============================================= ================== 68 24 98.5 40 CTTAATCTCCTATAGAGTTGAAAG # Left flank : TTTCACAATGTTTGGACTGATGAAAGGGTGATATCACCTCCGCACGAAGGGCATGAGTGGTCCCTAGTCCTTAGTACCAGATTCCTCTAAAACTAGTTTAAGTCAGGACATAAACCTCCGTGACTCCTTATGGTAGACCCACATTCGTTAGCTTATCCTCACCCTTTGCATCTTGCGCCCATCTCGCGTCTGAAAATAAGTCTTATATGATCGACCTTAGTATCCTGTGAACCTGGCATGAGCAGATCCATGTATTAATTGTGTCATTAAAAATTTATCTGAAAGTCTCTTCCCGGGAGCCGTCATGAAATGACGCTGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAGATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTTGGGGAGAAAATGGTAGATGTGTTGAAGAACACAAAAAGTTTCA # Right flank : ATTACACTAAATACTACGTAATATGAATAGGTACTGTGAGACGAGAGTGGACTTTTACCTTTGCGGACGGTGTTAAATTTCAGAATCAGTATCCTCTACTACGAAACAAGCCCGAAAAATTACCCACCATCTTGAGGCCCCGTTCATTACATTGATTCTTGGATCTCGTGAGATAACAACTCGTTAAGTTTCCTAGGTCACGATTCACTCAAACAAGAAAACACGTTCATTATTTCCACTTCCGGTATCAAGAGGACATCTTGAAATTGAAGTGACCTAACTCTCCTAAACATGAGGAAAGACCAGGGAACGCAGAGGTTTCCACATCACGGGATCTGGTTATCCTCTCGATATCTTACCCGTCCTCACCCCCTCTCGCCTTAAATACCTCTGAAAGTACTTTACCCCATGGAAATCGTAAAGGCCAGCCTTACCTTGATTCCCACAAGGGACGTGATCCTACCGCCGGTGACCTCGAAAGTCCTGAAGTACCTTATCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 5 184390-189905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031156.1 Metallosphaera prunae strain Ron 12/II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 184390 24 100.0 36 ........................ ACAATAATTTCTGAAACCCCCTTATCATGTACAGTC 184450 24 100.0 40 ........................ TATCTCCTTTCACACCAACGCTCACTCCTAGATTCGTCTT 184514 24 100.0 39 ........................ ACCCCCATCCCATCCGTGACCAGTTGAGGGGTGTCGCTG 184577 24 100.0 41 ........................ TTACTTATTATGTAAAAACTTATATTTAAATTTTTCTCTAT 184642 24 100.0 38 ........................ TGGGAACTCCAGTAATTCACCAATTGATGGCTCCATTT 184704 24 100.0 38 ........................ TCCGTGAGGGCTCACATAAACCTCTCAATCAACCTCCC 184766 24 100.0 41 ........................ TTCTTGTGAGGCCGCCCATTCTAGACATTTCTTAACCTCGT 184831 24 100.0 39 ........................ AATAGCTAACGTATTGGAACTCTTCGATAAACTACTCAA 184894 24 100.0 41 ........................ TAATAACCTCCTCTTTCCATGCACTTCCACCCTTTTCTTTT 184959 24 100.0 39 ........................ TAGTAATGAACGACAACAACCTTGTCTAACGGTAACAGA 185022 24 100.0 39 ........................ TTCATTCAGAGATACCCTAGAGGAAGAGGTTGAGGAGGT 185085 24 100.0 37 ........................ ATAGTGTTCTTTTTCCTTAAGACCAGCTCTCCACCAA 185146 24 100.0 40 ........................ AAGAAGGGGGTTTCATCTCGAGGCCCGATTTGATATTCAA 185210 24 100.0 41 ........................ AGTGCCCCACCGTACACGGTAATCGGAACAACCACTAGCCA 185275 24 100.0 38 ........................ TGGCCCCAGGTCCTGGACCTGGACCTGGAGGTAGGGGG 185337 24 100.0 39 ........................ CGTCAGTAGCCCTTCCATACTGGACGTATTCGTCGTCAA 185400 24 100.0 40 ........................ GAAAGAGCTGAGACGCCAATGGGTCCCTGTCCACCCATAT 185464 24 100.0 39 ........................ TTCTCGATGATTTAGATGACCAGACCAAGGTCAAGATAA 185527 24 100.0 39 ........................ TGTCACGCGGTTTTATGCGTAATGATTTCACATCGTAAT 185590 24 100.0 37 ........................ TAAGATTCAGCGTTTCCTTTATAGGCAGCGGTTATAG 185651 24 100.0 42 ........................ ACATCCGGAAGGCGTATGGAAAGATGAATTGATAAGGCATTT 185717 24 100.0 39 ........................ ACCAACATCAAGAGCGAAACCGCTATTAATTATATCATT 185780 24 100.0 41 ........................ AGTGAAGTATCTGGAGGAACAAGTCAAGGAGTACGACCTAG 185845 24 100.0 42 ........................ AATGTCTACTTTCTTATCCCTCTCCCTCAGCCTCTTTAACTT 185911 24 100.0 40 ........................ TATTCAACCTTTATTTGAATGTCTCCATCAGAAATTCTAT 185975 24 100.0 44 ........................ AACTACTAATTCAAGAAGTGCGCCATAAGCTAGGGCTACAACTT 186043 24 100.0 40 ........................ CTTTTAATTGTCTTAAATATTCTTTCGCTTTCGGGTCTAA 186107 24 100.0 40 ........................ TTTTTTGGAGGATTATTTAACGATGTAGAGAACGCAGTAA 186171 24 100.0 41 ........................ CTAATGCTGCTTCCGCTCCCACATCGGCGGGTCTAAGAAAA 186236 24 100.0 39 ........................ CACGGTACCGACATACAGCTATTTTCAATGGAGCGACGG 186299 24 100.0 41 ........................ GCATTATCTTCGGCACTCAGATCCACGAAGGGGGAGTTCCA 186364 24 100.0 36 ........................ TCAACCTAGTGACCCCCGTTACGATCCCTGCAAACT 186424 24 100.0 42 ........................ GCGGTTCTCCTCCTCGTCCATAGAAATGAACGACAACCTTGT 186490 24 100.0 43 ........................ CAACAAAACATTATCGGGCGTCATAAACCGATAAGCCATATCG 186557 24 100.0 43 ........................ GGGACTAGTTCTTCTTTTCGCTTTTGGCCCGGGCGCTGTTCTT 186624 24 100.0 41 ........................ TAATCCTGTACGAACTCACATCCCCCATCTTCTTCTCCACA 186689 24 100.0 39 ........................ TCACGTATGCGGCCCCAACCCATTCTCGTGAAGCCGCCA 186752 24 100.0 42 ........................ ACAGTGAGAAAATGATTATTGGCGTGGGACGTTCACCGGGGG 186818 24 100.0 38 ........................ TTTATTTTTTGTTATACTAAATAATTAACTTAAATTAT 186880 24 100.0 41 ........................ CCTACACTGAACGTAACTAGTTTCACCGCTGCTTACAGCTT 186945 24 100.0 40 ........................ TCCGTAAGGGAGGGGATGAATAGCCCCCTTACAGAAACCT 187009 24 100.0 39 ........................ GCTCTAATACGTTGTCAATACTGTCTTTAGAGAAGAGCT 187072 24 100.0 40 ........................ TAACGCCATCCTTGTATCATGACTATATCATTATGGAGCG 187136 24 100.0 39 ........................ AGATGAGTGACCTAATACGTCTGATATTCGCCATGATAA 187199 24 100.0 40 ........................ TAGGATTGCGTCCTACCTGAATGCCGTAACCTTTCAGGTG 187263 24 100.0 39 ........................ CTCTCATGAATTTCCCCACATAGGGAGCACGTCTTAGAA 187326 24 100.0 39 ........................ AAGCCAGAATATCTTAAGATAACACCTAAGATGTTAAAT 187389 24 100.0 38 ........................ GAATACCTCTCCAATCAAAAGCCAACGTCCCACTGAGG 187451 24 100.0 43 ........................ CTAGATGAGCAGTACAAGGAGGCAAGGCAAAAGATTGGTCCGT 187518 24 100.0 42 ........................ AGTTCTACCGCTAGGTGCAAAGGGGTGTAACCATCAGGGAAG 187584 24 100.0 37 ........................ CTACCCTCCCATCCACCTTTTTCATGAGGTTGAGAGG 187645 24 100.0 41 ........................ TTCTAGTAATGTGGAGCGGACATGGATTTCATCTATTTTAC 187710 24 100.0 40 ........................ AACCCCTGACCGAACTCCCTAGCCAATTTCATTAGATCGA 187774 24 100.0 36 ........................ TCTCTTCCTTAACCATCTTCTCGATGGCTCTTCTGA 187834 24 100.0 39 ........................ ACGTGAGCGGGACGACCATCACCCCTGGGTCGTGTCCGT 187897 24 100.0 36 ........................ TGAACTCATCAAACTCTTTCTCTTTGCCGTAAAGCT 187957 24 100.0 39 ........................ AATGCAGGGACCGCTTTCCAGTACGATTCTGCAACAGTT 188020 24 100.0 42 ........................ TGGTTAAATTCTGCATTCAATTTTTATCAAAATCTAGCATGT 188086 24 100.0 40 ........................ TTGAGATTCATGATTGCAATGACGTCACGGTCGTTTTCAT 188150 24 100.0 42 ........................ CAAGTTGAGCCAGGACCTCCTCAACTTCTTCCTCTAGGGTAT 188216 24 100.0 41 ........................ TCTCAAGAAGAAGTTAGAGTCTCAGCCAGAGACTCAGACCG 188281 24 100.0 40 ........................ TGAATCATGGAGAAGAAAATTTGAGAAAGGAAAAGCAAAA 188345 24 100.0 41 ........................ TAACTTTCACGATATACTCGCGTCATCCAATAACCGTATAA 188410 24 100.0 41 ........................ TTCCCTTATTATTTTGTTCCACTCTTCTCCAGTAATTTGAT 188475 24 95.8 39 .............G.......... TCATTTTTTGGTTTTGTATTTCTACTGTAACTTCAATTA 188538 24 95.8 40 .............G.......... CTCGTGGTCTCAACTAAGGGTGGATCGGCTTCAGTGACCG 188602 24 100.0 39 ........................ AGTACTTTACTTTGTGAATGGAGGAACATGGAAAGTAAG 188665 24 100.0 39 ........................ ATTCCAAGAAGTTATCAAACAATTCCGTTTGTGAACTGT 188728 24 100.0 40 ........................ CCTCGTCTGGAATCACTAAATCTTGCTCGTCAATTATTGA 188792 24 100.0 42 ........................ TCAAACATGAGTCTTGTCAAAACTTTCACGGCACCGAGTGGA 188858 24 100.0 39 ........................ CCTGCTCCTCCTGATCCATTCGCTGACGATGTACCTGGA 188921 24 95.8 39 .............G.......... CTTGATACACCAATCACAGTGAGTAGTAATACACCGATG 188984 24 91.7 40 .C...........G.......... GGAGCAAACGGGCAAAACGGAGCCGTGGTGGTAATCGCAT 189048 24 95.8 39 .............G.......... TCTTTATTGCTATCTGGATTGATAGTTTTCCGTAGAACT 189111 24 95.8 39 .............G.......... CTAATAACTGACTCTCTATCACCTTGACCATTTTTTGAA 189174 24 95.8 42 .............G.......... AGACTGTTTTCCAATTCATTATGATAACCTTAATGAATCACG 189240 24 95.8 40 .............G.......... AATTTTTTCTCTAACTTTCTAAGTAAAGCCTTATCATGTT 189304 24 95.8 40 .............G.......... ATGAAAAGAATAGGTAGATCACTTTTTGGCATCATTTGAT 189368 24 95.8 41 .............G.......... TCTAAAAATTCAATCTTCTTTTCAAGTATACTTTTTCTTCT 189433 24 95.8 44 .............G.......... CTTCTGCTCGGTATCGTCTAAGGCAGGATTCGGTGAATCCTCAC 189501 24 95.8 39 .............G.......... TTCGACTCGATTAGCTTCCTTACCTCTGCCAATTTCAGC 189564 24 91.7 39 .............G.......G.. AGAAGGGTTCTGAGAAATCCCTGTAATCATTAGAAGTAA 189627 24 95.8 40 .............G.......... AATTGCTCAAAGACTTTTTGGAGTTTTAGGTTTTGGGTCT 189691 24 95.8 40 .............G.......... AATTGAACTAGGGCGAGAATGCCCAATATTATACCTATTA 189755 24 91.7 41 C............G.......... TATGCGTTTTTATTACATTTTGATAGGCCGTGTCAAAATCA 189820 24 95.8 38 .............G.......... TCACCTTCAACTGCCGAGACCATGCAGTGGTATAGAAT 189882 24 91.7 0 .........T......A....... | ========== ====== ====== ====== ======================== ============================================ ================== 87 24 98.9 40 GTTAATCTCCTATAGAGTTGAAAG # Left flank : ATAACTCCAACCCCTGAGCTCCTCCTCAATCGGGTCCGAGGCCCTATACGAGTGGAGGAGCCTGAGTTGTCTCGTAATCTGCGACCTCATGGGTTTATGTTGGTTGGGAATCTAAAATTCATTCAAACGTGGGGGTTGAGAGACTTCCCGTGCAGTGGCGGGATTGGAGTGGGGGTGGACGGTGTGTGGGATGGGCTGATCCCTAGGAAGACCGGGACAGAGGGGAGTTGATCGTGAAGTTTAGGGCGTGAAATGATACAATTTTAGTTTGATGGGAGTAAAATATTGATTCCCTACTATAGTCCTTGAGTTAGGCTGTCCTACTATCGTGACCAGGTACGTCGTTAAAGGTATCTCATTACATTTATAGAGAATACGTTAGTGTCCCGGGAGTTGTAGGGATCTGACGAGATCTGATAAAAATTGTAAGACAATGAGACAGAAAAGATTATATAAAGGAAGAAGATAGATAATGAATAGAAGTAATATAAAAGGTATCA # Right flank : GAATCACACGTTCTGATATCGGAAAGTTTACCTTTTTTACTCCCTCCCAATTATTCCCTGTGACATGCCTCATAACTCCCATCGGGTTCGACGAAAAGTTCATCGTGAGAAGTTTCCTTCGGCACGGCAAATCGAGGATCCAGGAGGTTCTCCTGGTTAAACCCTCCGCGAAAAACGAGAAGACGGAGATCGCAATCTCAAACCTGATGAAACTCCTGTCCGAGGCCTCGACCCCCCTCCAGACCCTTGAGATCAATCACGACGATTTCGTCTCCTCAGTCTCTAGAATAATGTCCTGGGTTAAGAGGTCGACTCACTCGGACTACCTCCTCAACCTATCCAGTGGAATGAGAATAGTCGACCTTGAGATCCTTACTGCCTTCCTTCTCCTCCAGATTGACGCTGAGGTTGAGGTTGAGACCGAGACCCTTCAGGGGCTCGTGACTTTCAGGGTGAAGGACCTCATCCCATATCAACTTGAGGAGAGCGACCTCAAGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //