Array 1 2973-437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHT010000020.1 Phocaeicola vulgatus strain DFI.4.82 MLANOAFF_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2972 33 97.0 31 ................................T TGTTAAGGTAAACACCCTCTGACTTCCCATT 2908 33 97.0 31 ................................T TATAGATAAGCTGAATGCCCCACGCTATAGG 2844 33 100.0 32 ................................. AGCGTTGGTTTCCTGCCAACACCACCAGTTTA 2779 33 97.0 32 ................................T ATGATGAACGCTGAACAAAACGCTGCTCTTAC 2714 33 97.0 33 ................................G CTTATTCCGGTATCCGAATATAGTTGCGCAGAT 2648 33 97.0 33 ................................T CGTCTGCTTGCAATGACGATAGTACTTCGATTA 2582 33 97.0 33 ................................T CTCTTTCTTGTCTATAAACGCACAACTCACACT 2516 33 97.0 33 ................................C TCTCTTGCTACAGCTGTTTTGCAATCTGCTGGA 2450 33 97.0 32 ................................T TCAGCAATTGGCTAGTGAGAAGTCTGAACTTA 2385 33 97.0 33 ................................T CTCTGGGATTTGAAAAATACTAATATTCTTAAG 2319 33 100.0 33 ................................. TTTTACGATAACTAGTGCTCATCGTACTCCCGA 2253 33 97.0 32 ................................T CTAATACGATACAATATAATGTATGTGCGTAT 2188 33 97.0 31 ................................T TTAAAGTAAAATATTATAACTTTGTCTAAAA 2124 33 100.0 33 ................................. TTGGTATGGTTGTAGTATATCACGTTTTTAAAG 2058 33 100.0 32 ................................. ATTGTCCATTGTATAGCATGTTGTGCAGCCTG 1993 33 97.0 34 ................................T TTGTCGCTGTTTTTAATGTGGTAAAAGCCATTTT 1926 33 97.0 33 ................................G CTTCGTGGCTTGTAATTTGCCCGCCAATCGTTT 1860 33 97.0 34 ................................T TTTCTTGAGTATCTGTTATGCTCTAATGTTCATT 1793 33 100.0 33 ................................. TTTGGTGATCGTAATCGTCATCAGGTGATTGAT 1727 33 100.0 33 ................................. TAGATATTCGGATAATGTCCATGTGTTTGATCA 1661 33 100.0 32 ................................. AGGCACTGTGTCGTATGACCGTGAAATTAAGG 1596 33 100.0 33 ................................. ACTGCGTTACGCGAATTATCCGAAAGATTACTT 1530 33 100.0 33 ................................. CTCATTATAAAATTATTATTTACCAACACAAAA 1464 33 97.0 32 ................................T ATATACTTCATAAGGATGCTAACCCGTTTATC 1399 33 97.0 32 ................................C GTTACCAAAGATGGCTGCAATCACAATCAATG 1334 33 100.0 33 ................................. CTGAACGCTTAGTTTTATGAATGAGAGAAGAAA 1268 33 97.0 34 ................................C TTCTCCACAGGGTAGGGAACCTCTACCTTTTTCT 1201 33 97.0 36 ................................T CGGCCATAGCAATGGCAAGATAATCATATACCAGTG 1132 33 97.0 33 ................................T TTGTTCGGCGCCGTTTTTGCCCACGAGGCAAAA 1066 33 100.0 33 ................................. TGCTTATCAAGCTGTGGCGGAACGTGGAATGAA 1000 33 97.0 34 ................................C CGACGTGGTAGATGAGCCTTTTTTAGCAAGCAAA 933 33 100.0 32 ................................. TTCTTTAGAACAAGACTTTGAATATCATCATA 868 33 100.0 34 ................................. AGCTGATGTTGCTTTTGTTTGGTGACAGAAGCAA 801 33 97.0 34 ................................C ACCATACAACAGCCAGCAAGCGACAGAAATCAAA 734 33 100.0 32 ................................. TAGCAGATCCCATCCCTTATAGATATCCTCCA 669 33 100.0 33 ................................. CTTATAGAGATTTGACAAACAGATATAGGGTAT 603 33 97.0 33 ................................C GTCTGTCTGTGGAGATACACCCGGATGCGGAAT 537 33 100.0 33 ................................. CGCAATCCACCACTATCATAGCTCGGATGAACT 471 33 93.9 0 ....................A.........G.. | TA [448] ========== ====== ====== ====== ================================= ==================================== ================== 39 33 98.2 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTATTATACTATCCCTTGTCGTTTATTTGTTATATTGTTGGTTATTAATGTATTATTATCTGTTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTAT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //