Array 1 176333-179869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFW010000007.1 Erwinia amylovora strain MLI181-18 NODE_7_length_223008_cov_12.892290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 176333 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 176394 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 176455 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 176516 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 176577 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 176638 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 176699 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 176760 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 176821 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 176882 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 176943 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 177004 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 177065 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 177126 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 177187 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 177248 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 177309 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 177370 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 177431 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 177492 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 177553 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 177614 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 177675 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 177736 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 177797 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 177858 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 177919 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 177980 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 178041 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 178102 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 178163 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 178224 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 178285 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 178346 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 178407 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 178468 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 178529 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 178590 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 178651 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 178712 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 178773 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 178834 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 178895 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 178956 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 179017 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 179078 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 179139 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 179200 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 179261 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 179322 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 179414 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 179475 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 179536 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 179597 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 179658 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 179719 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 179780 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 179841 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 58 29 99.3 33 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188909-190769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFW010000007.1 Erwinia amylovora strain MLI181-18 NODE_7_length_223008_cov_12.892290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188909 29 100.0 32 ............................. GGAACCATATTCTTCATAGCCTAGCTTTTCAT 188970 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 189031 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 189092 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 189153 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 189214 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 189275 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 189336 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 189397 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 189458 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 189519 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 189580 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 189641 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 189703 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 189764 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 189825 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 189886 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 189947 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 190008 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 190069 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 190130 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 190192 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 190253 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 190314 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 190375 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 190436 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 190497 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 190558 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 190619 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 190680 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 190741 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 200233-200561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMFW010000007.1 Erwinia amylovora strain MLI181-18 NODE_7_length_223008_cov_12.892290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 200233 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 200293 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 200353 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 200413 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 200473 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 200534 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //