Array 1 15993-16321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAE01000002.1 Pasteurella multocida subsp. multocida strain THA contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15993 28 100.0 32 ............................ ATCTACAGAAAGAGAATTTAAAGAATGGGAAA 16053 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 16113 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 16174 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 16234 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 16294 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97503-98070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAE01000001.1 Pasteurella multocida subsp. multocida strain THA contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97503 28 100.0 32 ............................ CGGCACTGAGTGCGACAATAGAGCCAACTGAC 97563 28 100.0 32 ............................ TATTCAAAAAGTTAATCTTTATACTTCTTCAA 97623 28 100.0 32 ............................ AGAATGTGGCGTTAAGTTAGCAAGACAGCGAT 97683 28 100.0 32 ............................ AGAATGTGGCGTTAAGTTAGCAAGACAGCGAT 97743 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 97803 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 97863 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 97923 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 97983 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [97991] 98044 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 273252-274871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAE01000008.1 Pasteurella multocida subsp. multocida strain THA contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273252 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 273318 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 273384 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 273450 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 273516 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 273582 36 100.0 30 .................................... AGTACAGATGAGTTTGTGGTAAAATTTCTT 273648 36 100.0 30 .................................... ACACGGTGATTCCTTTTATAATGACTATCA 273714 36 100.0 30 .................................... TACGAAAACGACCTAGCGACAATGTCTTTA 273780 36 100.0 30 .................................... GGAATCTGTACTGCTGTGTAGACAATCGCT 273846 36 100.0 30 .................................... TCAGCTGCCACTAAGGAGACAAAGGGTTTT 273912 36 100.0 30 .................................... GCCCCTTCTGCGATTAACGAAGCGTACTTA 273978 36 100.0 30 .................................... TCAATGCTTTGATAATAGCTACACCACGTT 274044 36 100.0 30 .................................... ATATTAATGAATTTAAACCCTTTTAAAGCA 274110 36 100.0 30 .................................... AATAAACGCTTGGACGGTAACTTAATACAT 274176 36 100.0 30 .................................... GCTGGAATAGTGCCAAAACTATCATGAATT 274242 36 100.0 30 .................................... CTTCTTGTGGTGTTCAACAAATAACATCTA 274308 36 100.0 30 .................................... CATAAAGATAACTTAATGGTCTAACCTTAG 274374 36 100.0 30 .................................... TTTTTAGGTTTTTAATACTTTGACTGAGTA 274440 36 100.0 30 .................................... TCGTTCACCTAACGACTACCTTTATACATA 274506 36 100.0 30 .................................... TCTTCTTAGTGATTTTAATAAAGTTTAAGG 274572 36 100.0 30 .................................... CCGTTTGATTCATCTTCGGCTGTATTAAAA 274638 36 100.0 30 .................................... AAAAACATGAAACAACAATTAACAACAACA 274704 36 100.0 30 .................................... TATGAAAGGTTTATTAAAACTCGCAGACGG 274770 36 100.0 30 .................................... GTCGCTTGCCGTCTTGAGCTGTCCCTCCGA 274836 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.2 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //