Array 1 164392-165319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEY010000015.1 Pectobacterium brasiliense strain NAK:252 PAFPLLIM_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164392 28 100.0 32 ............................ AGAATTCATACGCATTTCCGGTTACGCCATCC 164452 28 100.0 32 ............................ GGAAACCCAAAGCCATCACTACGCTGGTGGCC 164512 28 100.0 32 ............................ TTACTTCCCTGAGGTGGAACTAACAGCATTTT 164572 28 100.0 32 ............................ CAGCACGGCTTTACTGGTCTGTGCATCGCACC 164632 28 100.0 32 ............................ TAAAACCATCACAAAACTATCACAACAGCATC 164692 28 100.0 32 ............................ CCGCGCGGGGCGTCATGCAGAAAGAAAATCCG 164752 28 100.0 32 ............................ GCCGCCGTGCTGCTGCTGGGCGTAGCTCTACG 164812 28 100.0 32 ............................ TGTGCCGCTTCCTGCGCCGCTTGCGCGGCTTC 164872 28 100.0 32 ............................ AATGCGCAGTTGGAAGCGCAAAAGACACAGGC 164932 28 100.0 32 ............................ TGATTACTCCGGCGCGGTTGGCGATGGGCGGA 164992 28 100.0 32 ............................ AACAAACCGATTAGTGAAGTGATTGCTGATTT 165052 28 100.0 32 ............................ AGCCCCGCCGATAGACCCCGTCACATACGGAA 165112 28 100.0 32 ............................ GGCAATGGATGCCGTGCTGGCCTCCGCTGATG 165172 28 100.0 32 ............................ CATGCCCGAAACGCCTCAAACGACTTAACCGC 165232 28 85.7 32 .....T.....T.C...T.......... GAAATCGTCGCCGATATCTTCAGCACCGGAAT 165292 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGACTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173183-171249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEY010000015.1 Pectobacterium brasiliense strain NAK:252 PAFPLLIM_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 173182 28 100.0 32 ............................ ATTGTGAACGGCAGAGGTAAAACGGTCCCGGA 173122 28 100.0 32 ............................ GATCCGCGTCAGCGGGGCGGGGCGCTGTACTG 173062 28 100.0 32 ............................ AAGCCAAATTATTTAATGATTGAATGATATTA 173002 28 100.0 32 ............................ TGTAACCAGCCTCGGATTTCTTTTCTGGCTTC 172942 28 100.0 32 ............................ GGCATCAACGGTTAACCCATACAACGACAACT 172882 28 100.0 32 ............................ GCGAAGAAGTCCGGTGAGATTAAAGCGGGTGT 172822 28 100.0 32 ............................ TTTTTGTACCATAACGCTCTGTGTCGCTGTGA 172762 28 100.0 32 ............................ GTTACCAGGAACAACCCGTTAATTTTTGGATT 172702 28 100.0 32 ............................ AGATAGAAAAATTGCTAACGGTCTTTCTTGTG 172642 28 100.0 32 ............................ CCCAAAATAACCCGTTCGCACCTTTCTTCTTG 172582 28 100.0 32 ............................ TTGATCCCATGCCGTTAATTATACGGACAATT 172522 28 100.0 32 ............................ CTGAAGGACGGCCATACGACGCGGGGCGATGC 172462 28 100.0 32 ............................ TTGTAGCTGTTCCACGCATCGCGGCATTTTTC 172402 28 100.0 32 ............................ TCAACGAGTATAGCGCCGTAGTTCGTATAAGA 172342 28 100.0 33 ............................ GAAATGCAGAAGCAGCAGGCGCAGCAGAAGCAA 172281 28 100.0 32 ............................ TTTCATCGTCCGTGCCTCCGATACCTGCGAAG 172221 28 100.0 32 ............................ TGACAGCACTCGTCAGTGAGATGTGCTTTAAC 172161 28 100.0 32 ............................ CGCATCGAGAACGAAACCACGGAACGGGAGAG 172101 28 100.0 32 ............................ TGAGATGAAACTAATTCCTAGGCCGTTCGTGT 172041 28 100.0 32 ............................ GTCGAAGCATACGCCCTAAAAAAAGCAACTGA 171981 28 100.0 32 ............................ GCCCAATCCGAACGATCCCTCACCGCTATTTG 171921 28 100.0 32 ............................ ATCGGCTGGTTTTGGTTTGATGGATCGCGGTC 171861 28 100.0 32 ............................ GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 171801 28 96.4 32 ...........G................ TGTTACCGCTCAGCGCAATAATCAGCGTTATA 171741 28 100.0 32 ............................ TAAATATGTGGGTTTCTGCTGCGTCAACGTTT 171681 28 100.0 32 ............................ CTCACGCGTACCCGAAGAAAGAAGTAGGCTGG 171621 28 96.4 33 ...........C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 171560 28 96.4 76 .............C.............. CTCGACCTGCGCGGCACTGGCATCATCAGTAGGCAGCTTAGAAATGATGAGGATCGGCTCGCTAAAATCGGATATG 171456 28 96.4 32 ...............A............ AAGCCAAGAGCAACAACTCGCCAATGATCCAC 171396 28 100.0 32 ............................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 171336 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 171276 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ============================================================================ ================== 32 28 98.8 34 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAAAATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 181814-182260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEY010000015.1 Pectobacterium brasiliense strain NAK:252 PAFPLLIM_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181814 28 100.0 32 ............................ CGTAGCGGGAGAAGGCTCTCCCCGTGGGGTAT 181874 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 181934 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 181994 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 182054 28 96.4 31 ...........C................ TCAGATAATTTCCTCATCAAACAGCAGTTCA A [182079] 182114 28 92.9 31 ...........C.C.............. TCGAGGACGAGCTTTGCGCGTCCATTGGATA A [182139] 182174 28 92.9 31 .......A.........T.......... TGACTGATTTATTGAGCAAAGAAAGGATGGA A [182199] 182234 27 75.0 0 ............GC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : GATTATCGGGATGCGTCGCTGCCGCGACGCATTTTTGAGGGCTACTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTAGTGATGGGAATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACATGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //