Array 1 17234-16840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGV010000020.1 Streptomyces paradoxus strain DSM 43350 Ga0415310_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17233 28 75.0 33 ACACCA..G................... CTGGACTGGATCCGCCCCGCGACCGCTTCCGGA 17172 28 89.3 33 ..A..........T.......A...... CCGCGCCAAGCAGGGCAGCGAAATCCTCAACCG 17111 28 92.9 33 ..T...T..................... CGTCAGCCGGATTGCCTTGCCAGTGAGGTCGAA 17050 28 100.0 33 ............................ CCCCTGGATCAGGGACTTGCCCGCGGCCACCAG 16989 28 96.4 33 ......T..................... GTCGTTCGCCACCTGGCTCCCGCCCGGCCTGTA 16928 28 92.9 33 .........A.G................ GGGTCTGGTCTGGGCCTGATGGACGTACTGGAG 16867 28 92.9 0 ...........G.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 91.3 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : GTCACCGACCCCGACACACTGCGCGTCGCCCTCCTCGGCGGCATCGGCCCCGCCAAGGGCTACGGACAGGGCCTGCTCACCCTCGCCCCGCTCCACACCACCGAGGCGCACCATGGCTGAACCCTGGTGGCGGACCGGACCGCGGGACCTCCACCGGCTCGAGGACCGCATCACCAGCCTCTACGCCGAGCGCTGCCACATCGACCGGGACGACACGCCATCGTCCTGATCAACAAGGCACGCACCGTCCACGTCCCGGCTGCCTGGCTCGCCGTCCTCCTCATCGGACCCGGCAGCCGGATCACCCACTCCCATCACCCTGCTCGCCGACTCCGGCACCGCCGTGTGTTGGGTCGGCGAGCAGGGCGTACGCCTCTATGCCACGGGCACCAGCACCGCGCGCGGCTCCCAGCTCCAGCTCCGCCAGGCTGGCTGGGCACCCGCCGCAAAGAACGCGTCGCCGTCGCCCGCCGCATGTTTCATGTGCTTACCCGGCGAGA # Right flank : GGCCCGGCACGCCGCGGCCGTCGCCGGCGCCGTCTACGACCACGTGGTCGACCGCTTCGTGCCCTAGGCGGAGGGCGTACGGAGAGGGGTCTGGCCGTATTCGATCTTCTCGGCCGCCTCTTCCTCATCCACGCACACGGTGCCTTGCCCGCGGCAGTCGTCGCACTTGTCCCAGTAGTGGTCGGGCTCATCGGTAGCTTCGTCGATGATCCCCCGGAGGACCTGCACGGACCCGTCCCCGTGGCAGTCAGTGCACGTGAACTCGTACTCGCCCGGCACCAATTCCATCGCGCTGACCTCTCTCCGGACCGTGTGTGACGGGTCGTGATCCTACTCAGCTGCCGCTGGGGGCGGTCTCACGGCAGAGCCCGCCCCCATGGTTCCGGCGTCAGTACCGGCTCTGAACCCACAGCAGGAGCAGGCTCACCGCGCCGCTACCCACCCCGTAGGCCATGCCGCGGGCGGCGTGCTGGTGGATGCGCCACTCCCACAGTCGCCGG # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26860-32539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGV010000020.1 Streptomyces paradoxus strain DSM 43350 Ga0415310_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 26860 28 96.4 33 .............A.............. GAGGTCGTCATGTTCCGTCGTGTCCTGCTGTGG 26921 28 96.4 33 .............A.............. GAGGTCGTCATGTTCCGTCGTGTCCTGCTGTGG 26982 28 96.4 33 .............A.............. CTGCCCATCGCCCCGTGGGAGAAGCTCCACAAG 27043 28 96.4 33 .............A.............. CGCGGGGGTGGTCAGCTGCTCCCACACGTCCGA 27104 28 96.4 33 .............A.............. CGTCATCACTGGCCAGTACCGGGCCTCGTGGCG 27165 28 96.4 33 .............A.............. TGGCTGTCGCCGCACTGGGCGGGCTCCTCCTGG 27226 28 96.4 33 .............A.............. TCCGACCTGGACTCTCTCGTCGGTCCAGACGGA 27287 28 96.4 33 .............A.............. CGACAACCAGGTCAAGGTCGCCAAGAAGATCTT 27348 28 100.0 33 ............................ GCCGGCAGGGGAGGCAGTGTTGATGGCCGCCAT 27409 28 89.3 33 ...........G.AT............. TTACGACCCCGAACTTTGGTAGGTGGCGGGTCC 27470 28 92.9 33 .........A...A.............. GCCCTTGGACGCGTTCTTGCCCGCGTAGTACAG 27531 28 92.9 33 ...........G...A............ CACGTTCCAGGGCCACTACTCGATATGCAACGT 27592 28 89.3 33 .....T............A....G.... CCCGTCGATCGCCTGCACCGTGCTGGTCGTGGT 27653 28 85.7 33 .............A..AA..A....... CTACTGCAACCACGTGCGCGCGCTCATGGTGCA 27714 28 96.4 33 .............A.............. GGGGTTCAGCGCCATGACAGCGTTGAGGATTCC 27775 27 92.9 33 ...A.................-...... CCGGTCGTCGTTGAGGAGGGATTCGATGAACTC 27835 28 96.4 33 ...........G................ CACGATGGCGGCATTGCCCTCGGGGCCCATATC 27896 28 96.4 33 .............A.............. CCCAGTGCCGGGGTACAGCGCCCTGGTCAGAGC 27957 28 92.9 33 ....G......G................ CTCCTTGATCGCGTCTGCGGCAATGTCGGCGTC 28018 28 89.3 33 ...A.......G..............C. TAAGGGTGTGCCCATTCAGGTACAGGTGAGCCA 28079 28 92.9 33 ...........G........A....... CCCGTCGCAGTCACTGCACGGGGTGCTGAAGGC 28140 28 92.9 33 ...........G.....C.......... TCCGTACACGATCGAAGGAAGGCGCCCCCGGCG 28201 28 92.9 33 ...........G..T............. CTGGGACACGGTCAAGGCGTACACGCTCGCCGC 28262 28 92.9 35 ...........G.........A...... GTACGGGCCGGAGGGGTCGCGGGGGGTGTAGCGGT 28325 28 100.0 33 ............................ CCGCAACAAGGCGAAGGGCAACGCGTGGGAGCG 28386 28 92.9 63 .............A.....A........ CGCCAGCGGCTCGTTCACCCCGAGCTGCTCTCCGAAGCGGTGCAGCTCGTACATTGCGGCCTG 28477 28 85.7 24 ...........G.AT..........T.. CACGGAGTACTTGGCCGCAGACAC Deletion [28529] 28529 28 89.3 33 .........A...A.....C........ CTACTTCACCGCCTGCCGGTTGGCCACCGAGGT 28590 28 92.9 33 ...........G.....A.......... CGACTACACCGCGCTGTTCGCGGAGGAGTGCGT 28651 28 85.7 33 A..........G.A..A........... CACGCACCGACCCACGTTCCGCGACGCGGCATC 28712 28 85.7 29 ......T....G..G.........C... CGGCGGGAGCCGTGGTTCACCATGTACGA 28769 28 100.0 33 ............................ GACCGTGGGTGACTTCCTGCGCACGCACGAGGG 28830 28 100.0 33 ............................ CCTGTCATCGACCTGCTGGAGAGCTGACCGCCC 28891 28 100.0 33 ............................ CCCGTATGTCGCCGAAGCCGACGCTCGCCAGAT 28952 28 96.4 33 ...............A............ CTGCATGGTGCTCACCGAGGGCGCCGACTTCCC 29013 28 96.4 33 ..............T............. TTTCACCTACAAGTACTGGCGGCCGATCGCCGG 29074 28 89.3 31 ...........GA........A...... CTTCGTCAACGGCGGCCACGAAGCTATCGGC 29135 28 92.9 33 .......................GA... TGCCTTCTTCACGGCGGGCATGGCGGGGAGCGC 29196 28 92.9 33 .................T....C..... CATCCGCAACGCGGCCGGCATCCTCGACGCCTC 29257 28 82.1 39 ......................GG.GGG GAGCTCGGCGGCACCGGCGATGTGCTGGCCGCCTGCCGG 29324 27 96.4 33 ..........-................. GTTCCTCAACATCGAGGAGATCGCCACGATCAT 29384 28 92.9 33 ............G...........T... GCGGTAGACGCCCGTACCCACGCCCTTCAGCAC 29445 28 92.9 33 ...........G......T......... CTTGGCGTGGTACTTGTCGTATCGGGCCTTCAG 29506 28 96.4 31 .............A.............. CTCCCTGTGGGGCTGGGCGCAGGAAAGGACC 29565 27 85.7 33 CG.........-.............T.. GGTGATCAGGCCCTTCTCGTAGTTCTCCGCGTT G [29571] 29626 28 96.4 33 ...........G................ CCTGGTCAAGAACGGACAGGCCGACCTCGCCGC 29687 28 96.4 33 ....................A....... CCCGTCGCAGTCACTGCACGGGGTGCTGAACGC 29748 28 92.9 32 ....C......G................ TCCGTACACGATCGAAGGAAGGCGCCCCCGGC 29808 28 92.9 33 ...........G.............T.. GGAGCCGTCCGCCTACGGCACGACGGTGCTGGC 29869 28 100.0 33 ............................ CTGCGGCAGCGGCAGCATGGGCAGCGCACTCTC 29930 28 100.0 33 ............................ CTTGAAAGAGTGCGTCACCGTCGTGACGTACCC 29991 28 100.0 33 ............................ CAGCTCCCGGGTGTCCCTGGCCCGCACGGCGGA 30052 28 100.0 25 ............................ CTGGGTGGTGGCGCAGGTCAAGGGC Deletion [30105] 30105 28 78.6 33 .CG...A....G..T..T.......... CGTGTCCATCTTCGGCCGGGGCCTTCGTGACTG 30166 28 89.3 34 .C...........T....T......... ATCGTCCGGCCGCCCCGGTCCCATCCCAACCACG 30228 28 92.9 21 T..........G................ CATGCCGTGGTTGGTGCTGGT Deletion [30277] 30277 26 85.7 33 ..........T..--........C.... CGCCTACCTGCGGGCCTGCCACGGCAACGTCCG 30336 28 96.4 33 ...........G................ CGGAATCAGCTTGACGCGGCGCCAGAGACCCTC C [30351] 30398 28 96.4 33 ........T................... GCGATCGAATGGGCAGATGTCCGGTTCAGTGGA 30459 28 89.3 33 ...........G..A...A......... CGCGATCCAGGCACTGCCGAAGGTGATGAAGAG 30520 28 89.3 33 ......T....G.............T.. TTCTTGTCCCAGCCGCGCGGGTTGCGTGGATCG 30581 28 89.3 33 ...........G....A........T.. CCTGGTCAAGCAGCGTGCTCGTACCCTGGCGAA 30642 28 89.3 33 ...........GTT.............. CCAGGAGAGCGGCGGCAACCCGCGCGCGGTCAA 30703 28 100.0 33 ............................ CACGGACGGCAGCAACACAGACACGGAGTCCTG 30764 26 89.3 33 .............--.......C..... CGGCGTCAACGTCGAGTCGCGCGCCGGCGATGG 30823 28 82.1 33 .G..C........A.T...T........ CTTGGCCTACAACGGCACCGGGCGGCCCGAGCC G [30829] 30885 28 92.9 33 ...........G..............C. CGGCATTTACAGCGTTGACGAAGTGCGCGCTAC 30946 28 71.4 29 ...........G.G..G..CA.CC..C. TTGCCGGCGTTCTTGCCCGCGTCGTGCAT T [30959] 31004 28 89.3 33 .G.........G.........A...... CCAGCTGTGGCCGCACATCCGCAAGGTCGTCGC 31065 28 92.9 33 ..............G.T........... TCACTTCGCCCCGATGATTAAGGACGTACTTGG 31126 28 96.4 34 ...........G................ CACCTGAGCGCCGACGGCCGGGTACTCGCTGAAA 31188 27 92.9 34 .....................-...T.. GGCGAAGGGGCAGATCCATACCTCCCTCGGGCTC 31249 27 96.4 16 .....................-...... AGGCATGAGGTGGCCG Deletion [31292] 31292 28 82.1 33 C...C...G..G.T.............. CACGTCTTCCCAGATGGCGCAGGTGTCGAGAAC A,G [31297,31305] 31355 28 92.9 34 .........A.G................ CGGTATCCACGTCGAGTACTGCAGCAGGACCGAT C [31360] 31418 28 78.6 33 ...C..........T......TAGC... AGCGCCCATGCTGGAGGAGATGACTCTGAGCGA 31479 28 92.9 33 ...A..........T............. TTCCTCGTCGGCGAGCTCGACCAGGCCGAGCGG 31540 28 100.0 33 ............................ CGGCATCGGGGGTGGGAACGTCTCGAGGTTGTC 31601 28 89.3 31 ..........TG.A.............. CCTGGGCGGAGCAAGTCGAAGCGGCTTTCGG 31662 26 85.7 33 ............T.T.--.......... CTGGCCTTCGATCACGGCTCAAGTGTTGGTCCG 31721 28 92.9 33 .....T.....G................ TCCGGGTGGGCGCCGGCAGCGCACGATCGGGTA 31782 28 89.3 33 ...A.......G..T............. CGCCGACGGGAACGCCCGGTACTACAGGGTCGC 31843 28 85.7 31 ...........G.....A.......AC. ACGGTCGGGCCAGACCGAACATCTGGCTGGC 31902 28 92.9 33 ........T................T.. CTCCTTCAGGGCGTCCGCGACAATGTCCGTGTC 31963 28 89.3 33 ...C...T.....A.............. GAGCTTTCCCAGGTCCACCCCGTAGACCTTGAC 32024 27 92.9 33 ....-......C................ CTTCCCGCTTCAGGTCCTCATGACCAATGACGA 32084 28 92.9 33 ...........G.......A........ GGACGCTGTCCGGATCGCCGGGGACAGCGGGAT 32145 28 82.1 33 ..T...........A..T...A...A.. TGAAGACGGGCCGGACACCGCGTCTCCACTCGC 32206 28 100.0 33 ............................ CTAGACTGACCGCGAAACCATCAGCCGCGTCTC 32267 28 85.7 33 .......G...G.TT............. GACGTCGCGGCTCTGGTTGGCGGCGTCGTTGAA 32328 28 89.3 33 ........G..G..T............. AAAGGCTTCCCTGCGGCTACGCAAGGGCGAGGT 32389 28 89.3 32 ......T....G........A....... CCTCCTCAGCCCGACGACGGAGACCTCGACCC 32449 28 92.9 35 .............A.............T CTTCCTGCACACGCTCGGGATGGCTTCGGGCGTTC 32512 28 89.3 0 ......T.....GA.............. | ========== ====== ====== ====== ============================ =============================================================== ================== 94 28 92.2 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CCACAATCGTGAATGCCGCACACCCACATCAACCACAGCCGCCCCCGCCCACCGCTGATCTCATCCAGCCGCCGCCGCAACGCAGCCGACACGTACCGGTCCCACATCACCCCCGCCACAGCAGCCGTATCCAGCAGATGCCCCAGCAGCAGATGAGTGCGGCCCCCATGGCGCGCAGCCGACTTCCCCCACAGCCGCGACACCCGTTCAACGGCCTCCGGCGACAACCCCATCGCCTTCATCAACTCAACGACCGAAGCCTCACGATCCACGCAACCCCCTCCAATGCCCGGCACCATAGGCCCTGCCACTGACATCAACACCGGCATGCAGATCCCAGTGCTCACGGCTCTGCCAGCTGCCAGGGTCCTGTTCAAACGGCTCCGGCAAGATGGAACACGACCCAGCAGGAGCATCAGCCACCGAAGCGAAGGAACCAGAGCTCAACCCAGGTGAATGCAAAACGTAGTTCTTGGTAGCGTCACCGCAGCTCAACAAGT # Right flank : CCCCGCTGGGGGTGTCGGCCCACAGGCCGTAGAGGTCGTCCCACTCGCCGCGGCTCAGTAGCCACGCGATGGAGACACGTTGTCTGCGGCGGTGTGGCCGGGCCTCCACCGCCGCAGGCGAAGTGCCTCTGCGTCCGTCGAACGGGTGAAGGTCCTCATCTCTGCGCAACCGCCGGACCAGGGTGCGAGTCCTGCACAGGCGACACCACCCGCTCGAACCTGGGGAGCCCGCTCTTGCGCAAGACCCTCGTCACGGCTGCCGCTGTTGCGGCCGGCGCGCTGACCGCCCTGTCCTTCGTTCCCGCCCACGCCGCCGAGTACAGCTCGGCACTGAAGATCCGCGGAGTTCAGTACGACGCGCCGGGCCGGGACTCCAACAGCTGCTCCTCCGGCAACACCCGCGAGGAGTACCTGACGGTGAAGAACTACTCCTCCCGCTCGACGATCAACCTCAAGGACTACGTCGTCAAGGACGCCACCGGTAACCGCTTCACCTTCAC # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [56-128] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //