Array 1 291854-291153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEI010000011.1 Pseudomonas aeruginosa strain 16014 scaffold11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 291853 29 100.0 33 ............................. TGACGCGGTTTGTTCGTAAGATCCGGACCATGC 291791 29 100.0 32 ............................. CCCGCGAGCTGATGGCGGTCAACCATGGCTTC 291730 29 100.0 32 ............................. GAAGCAAACCACGGGCCATTTTGGAGCGGTAA 291669 29 100.0 32 ............................. ATACGAGGCGGACACGTCCAGGAGCTGGAGAT 291608 29 100.0 32 ............................. CGCAGCGTGCGCAGGAAGATGCGAGCTTTCAT 291547 29 100.0 32 ............................. CCCTGTCCGACGCAGAGCGGGCGCGGCGCTAC 291486 29 100.0 32 ............................. ACCCTGCAGCGATCGATCAAGCTGCAGATCGC 291425 29 100.0 32 ............................. CCGCGCAGCAGCTTCCAACCCAGCGGGATCAG 291364 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 291303 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 291242 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 291181 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : GCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55186-56353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEI010000029.1 Pseudomonas aeruginosa strain 16014 scaffold29.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55186 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 55246 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 55306 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 55366 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 55426 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 55486 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 55546 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 55606 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 55666 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 55726 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 55786 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 55846 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 55906 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 55966 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 56026 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 56086 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 56146 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 56206 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 56266 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 56326 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67186-64878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFEI010000029.1 Pseudomonas aeruginosa strain 16014 scaffold29.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67185 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 67125 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 67065 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 67005 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 66945 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 66885 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 66825 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 66765 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 66705 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 66645 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 66585 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 66525 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 66465 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 66405 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 66345 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 66285 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 66225 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 66165 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 66105 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 66045 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 65985 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 65925 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 65865 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 65805 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 65745 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 65685 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 65625 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 65565 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 65505 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 65445 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 65385 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 65325 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 65265 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 65205 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 65145 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 65085 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 65025 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 64965 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 64905 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //