Array 1 12796-8676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSR010000086.1 Aphanizomenon flos-aquae FACHB-1290 contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 12795 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 12721 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 12649 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 12577 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 12505 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 12433 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 12363 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 12290 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 12220 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 12146 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 12073 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 12001 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 11926 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 11849 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 11778 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 11701 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 11628 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 11558 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 11490 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 11418 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 11341 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 11273 37 100.0 34 ..................................... ATAGTCCCTATTAGAGAGGATTGGGAGATGTATA 11202 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 11131 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 11057 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 10984 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 10911 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 10838 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 10768 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 10693 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 10621 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 10549 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 10477 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 10405 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 10333 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 10262 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 10193 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 10120 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 10049 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 9978 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 9901 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 9827 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 9756 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 9683 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 9607 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 9533 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 9460 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 9382 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 9307 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 9236 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 9164 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 9089 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 9017 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 8946 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 8878 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 8808 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 8712 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : AAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 899-1105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSR010000117.1 Aphanizomenon flos-aquae FACHB-1290 contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ========================================= ================== 899 42 100.0 40 .......................................... TCAGACAATGTACCACAGCGATCGCTCAAATTAACCGCCG 981 42 97.6 41 ......................G................... TCAGACAATTAATCAGCGTCAAATTAACAACATTATCTGCA 1064 42 92.9 0 ...C........................T....C........ | ========== ====== ====== ====== ========================================== ========================================= ================== 3 42 96.8 41 AATACCTCATCCTGTAAATCCTAAAATCCTGGAAATCCTGAT # Left flank : GCTTGTATTCAATTTGCAGCAAAGTTGATGGGGAATCACTACGAAGTGAGAAAAATCGCATGAATGGGTTTTTATTCGATGAAAATCTACCCGTGAAAATTCAATTTACCCCATCTTTACCCATTGTCCATGTTTCCATCTTAGGTGACAGTCCAAGTGATACCCAAATATGGCAGTATGCGAAAGAAAGAAAACTGGTAATTGTTACCAAAGATGCAGATTTTTCTGATCGCATGATGGTTGATTTACTCCCGCCTAAAGTAGTACATCTACGCTTTGGGAATGTGCGAAAACGTCAATTTCACTCACTCCTGTCCAGAGTTTGGCCAGAAATTGAAATTTTAGTGGCTGATCATCAGTTAATTAATGTTTATTTGGATCAGATTGAAGCTTTTAAATAATTAATGTTTGATACTAGAAAGCGATCGCTTAAAATGATAAATCACATCCTGTAAGTTATCAGACAATTGACCACAGCGATCGCTACCAATTAACCACCG # Right flank : TAGCGAAGCGTGGCGTTAGCCATTTCAGACAATTAATGCTACGATAAACAAATAATTACTTGGTATCATATCATGATGATTACTCAAGCACTGGAATTACAACCTAACACATCAGAAGATATCATTTTCCCACCCAGTGACCTATATAGTGATGAACCCCCCGTGGAAACAGAACTACATTTACGACAAATTATTCTCCTCTTTAAATGTTTAGAATGGCTATGGAAGGAGAGAACAGATTTTTATGCTGTCGGAAACCTAAGTATTTACTATAGTCCTCATCAAAAAAAATCAAAAGATGTTAGAGGTCCAGATTTTTTTGTAGTTTTAGGAACAGAACGAAAAACTAGAAAAAGTTGGGTAGTGTGGGAAGAAAATGGCAAATATCCTCATGTCATTGTCGAAATTCTTTCACCAACTACAGCTAAAACTGATAGAGAAATTAAAAAAGAACTTTATCAAGATACTTTCCGTACACCTGATTATTTTTGGTTTGATCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATACCTCATCCTGTAAATCCTAAAATCCTGGAAATCCTGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 80227-74274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSR010000010.1 Aphanizomenon flos-aquae FACHB-1290 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =========================================== ================== 80226 38 94.7 40 ....................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTA 80148 38 94.7 36 ....................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAG 80074 38 94.7 33 ....................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCAT 80003 38 94.7 34 ....................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGG 79931 38 94.7 38 ....................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAG 79855 38 100.0 35 ...................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAA 79782 38 100.0 37 ...................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAG 79707 38 100.0 35 ...................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCA 79634 38 100.0 42 ...................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGT 79554 38 100.0 39 ...................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAG 79477 38 100.0 39 ...................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCAC 79400 38 100.0 34 ...................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAG 79328 38 100.0 34 ...................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGG 79256 38 100.0 39 ...................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTA 79179 38 100.0 32 ...................................... CCTATCAATGAAATAATCGTCAATGCAGTCTT 79109 38 100.0 36 ...................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGAT 79035 38 100.0 42 ...................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGA 78955 38 100.0 35 ...................................... AAAAAATCTCTCCTACCAGAGCCGCGATGACAGGT 78882 38 100.0 39 ...................................... AACCCGCTTAATGGGCTGGTATGTGCAGATAAGATATAT 78805 38 100.0 34 ...................................... CTCCGAAGGATGGGTAACTTCTGCTACGCAAAGC 78733 38 100.0 34 ...................................... CAAAAATATCTCGATCAACATGATCTTTTAATTC 78661 38 100.0 37 ...................................... TTATGCTTCTGAATCTGAGGTCGCTCCTGACATAGAA 78586 38 100.0 34 ...................................... GGCAAATTTAGTGCTGACAATTTCCAAGTGATCT 78514 38 100.0 36 ...................................... CAGCATTGCCGATGCTAAATTCGTTTGGTTTAACGG 78440 38 100.0 43 ...................................... CAATTATTTCGCCATCCTGAATCTTGATGTAATCACGGCGCAA 78359 38 100.0 35 ...................................... TTCCCCATTTTACTCAAGAGAGATAGAGCATTTAT 78286 38 100.0 35 ...................................... TTCGGGTCTGTCCCCTACCATCAAAACTTCCTCTA 78213 38 100.0 32 ...................................... GAATCAATGAAAATGGATATCAATGGACTAGA 78143 38 100.0 36 ...................................... TTCTTCTTTGATGTGATTGAGTCAGGGGGTAAACTC 78069 38 100.0 34 ...................................... AAATAAATAATTTCATCACCAACTAAGGCACAAT 77997 38 100.0 36 ...................................... TCCTTCGCAATCCCTACCTCTAGCAGTACAACACTA 77923 38 100.0 36 ...................................... TGATAATTAATGATTCATCACACTGAAATCTTAAAG 77849 38 100.0 35 ...................................... ATGATATAAATGTGAGGCAAGGGAGGAAAGCCCAA 77776 38 100.0 42 ...................................... GAGTTGGGAGAAGGAACTAAAACCTCAGCGAGAGTAGTAGGA 77696 38 100.0 35 ...................................... ATAGAGAGCTCTTGACTCTGGAGAGCCAAAGAACG 77623 38 100.0 35 ...................................... AATGGTGAGTTCTGGACTGGTAAAAATTGGGGGAA 77550 38 100.0 36 ...................................... GAAAATTGACGTAAAACTGGAGAGTAAAAGTAAAAA 77476 38 100.0 37 ...................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCA 77401 38 100.0 37 ...................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGAT 77326 38 100.0 38 ...................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTC 77250 38 100.0 35 ...................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACG 77177 38 100.0 34 ...................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGC 77105 38 100.0 35 ...................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAA 77032 38 100.0 35 ...................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAA 76959 38 100.0 37 ...................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTA 76884 38 100.0 40 ...................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAG 76806 38 100.0 37 ...................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTT 76731 38 100.0 34 ...................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAG 76659 38 100.0 36 ...................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACT 76585 38 100.0 35 ...................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAG 76512 38 100.0 36 ...................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCT 76438 38 100.0 39 ...................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCA 76361 38 100.0 33 ...................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAA 76290 38 100.0 33 ...................................... TACAATCTATTAATGATTTAAAATCCAATTTAG 76219 38 97.4 38 T..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTG 76143 38 100.0 37 ...................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATA 76068 38 100.0 35 ...................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAAT 75995 38 97.4 36 T..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAA 75921 38 97.4 34 G..................................... TATGCCAACATATTCTGATATTTTCGATAACAAC 75849 38 100.0 37 ...................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAG 75774 38 100.0 35 ...................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCC 75701 38 97.4 36 G..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAG 75627 38 100.0 40 ...................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACA 75549 38 97.4 34 G..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAA 75477 38 100.0 32 ...................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGG 75407 38 97.4 32 G..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTT 75337 38 97.4 37 C..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGA 75262 38 100.0 32 ...................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCT 75192 38 97.4 34 T..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGAT 75120 38 100.0 37 ...................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACT 75045 38 97.4 35 T..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAA 74972 38 100.0 34 ...................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAAT 74900 38 97.4 39 T..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAA 74823 38 100.0 36 ...................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGG 74749 38 97.4 35 T..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTG 74676 38 97.4 40 C..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCA 74598 38 97.4 36 C..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTAT 74524 38 97.4 33 G..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGT 74453 38 97.4 33 T..................................... AGCGCAAATAATCTGACCTGACAACGGATAACT 74382 38 97.4 33 T..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATG 74311 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =========================================== ================== 81 38 99.2 36 AATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCC # Right flank : AAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACACC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 61-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSR010000120.1 Aphanizomenon flos-aquae FACHB-1290 contig120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 61 36 100.0 39 .................................... CTTTGCTAATTGGAACTATCCCAGAGATAGTGTGGTAGT 136 36 100.0 41 .................................... TTCCAACCATTCCACAACCTTATCTACGTTAGGGATTTGTC 213 36 100.0 37 .................................... TATCTAACGGAAACATTTTAAAGATAACATCCGCGCT 286 36 100.0 39 .................................... ATAGTAGTTGTTTAGTTTGTAGTTGTTGTGTCTCACTCA 361 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 39 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : CTGGGGACATTAATTGAATGGAAACTTACTGCGTCTCTAGCTTGCTGAGATTCCTTATTTG # Right flank : CAAAAAGACCAAACTAAGTCCCGTATTTATTTAGTCCCTAACAAGTGGGGACTCAATAGTTGTCTCAGTCTAAGTACACACCAATTTATTCAGTGTTCCCTGTTTCCTGTACCCTAAAACTAAAAAACTTTGTACCTCATGAGAATAGGAACTGCCATAAGCATAAACTGTAACTAATATCAAGAATTTAACAATATTTTTCATAAAGCTATGATAAGCAGAAAACCCTTGTAAACAAAGCATTGTAGAAATAATTTCAAGATATTACAATATTTTATATTTGTAGACAAATACCAAATTCCACCTTTATAATGCAAATATGAGCCACACAGGGAAACCACTTGTGTCAGAAGAATATTGGCGGGCTAAGATTTGGGGGTTACTACATGACCCTGTATTAAAGGCATTACATAACAATAGCGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTAATGAAACCTTGGGTTGAGACAGGTAAAACCCCTGATCAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 55310-55646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSR010000025.1 Aphanizomenon flos-aquae FACHB-1290 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 55310 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 55384 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 55457 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 55534 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 55611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : GATTTAATACTAGATGAATTAATCAACCAATCAATGATACGTCCCCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //