Array 1 112172-109095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXOO010000003.1 Nocardia speluncae strain DSM 45078 W9874_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================== ================== 112171 28 100.0 33 ............................ GTCGTATCGGCGACCATCGACACCTTCGACGTG 112110 28 100.0 33 ............................ CCGGTGGTCCGGCCGCGGATCCGGGGCAGGAGA 112049 28 100.0 33 ............................ ACCAGTTCCCGCAGCGCGGTTTCGGCGTCCCGG 111988 28 100.0 33 ............................ GTGTTCCGCGACCAGATGGGAGCCAACCAGGAG 111927 28 100.0 33 ............................ CTTCCGGATCACACCCTTCAGCCATTCCCAGGT 111866 28 100.0 33 ............................ GTGCTGCGTCGATCTCGGCGCCGCACTCCTGGA 111805 28 100.0 33 ............................ GAGTCGCAATGAGCAAATCCAACAGAGCCCGCA 111744 28 100.0 33 ............................ ACGTGGGCGCTGGCGAACCCGTCGTTCGGCGTC 111683 28 100.0 33 ............................ GGACCCGCAGTTGATCGCGCGCAGGCTGCGAAC 111622 28 100.0 33 ............................ GGGCCGGCTGCCGTTGTACTGCGGCCAGCCCGG 111561 28 100.0 33 ............................ GCACCAGCAGCACCCACCGCGGCTGGGCCGACG 111500 28 100.0 33 ............................ GTACAACCAGGTTTTCCAGCCGGGGCACCGTTG 111439 28 100.0 33 ............................ CGCATGTACATATTCCAAACCATTTCGCGCATA 111378 28 100.0 33 ............................ GTCCGATTCCGCACTCCTGCTTGGCCTCCAGCA 111317 28 100.0 33 ............................ GGCGCAGGGCAGCTAGACCCACCCGGGCCGCGA 111256 28 100.0 33 ............................ GTGCACCCACCCGAACACCGGCGCCAGGACGTA 111195 28 100.0 33 ............................ ATGCAAGGCCCGGACCCGGGACGCCGAAGGCCA 111134 28 100.0 33 ............................ GATGTCCGCGTACGCCGATATCGCGACCGGGTG 111073 28 100.0 33 ............................ GTCCTTGATCGCCTGCTGCCCCTCAGGGGTGCC 111012 28 100.0 33 ............................ CTACCACAGCCCGACGGCCGCGATCGGCGACAT 110951 28 100.0 33 ............................ CTGGAACGCCTTGCGCTCGGCTGCCCTTCGTAG 110890 28 100.0 33 ............................ CGGGGGCGGGGTGTCGTTGTCGCTGGGAGCCTC 110829 28 100.0 33 ............................ GACCTCGGCCGGCTTGAGTAGTTCGGGCCAGCC 110768 28 100.0 33 ............................ CCGGGCCGAGGTGATCCGGGCGTGCTCGCTGAC 110707 28 100.0 33 ............................ GCAGTTGATCGACGCCCCGGTGCGCACGTTCTG 110646 28 100.0 33 ............................ GCTGTGCTCGTCGATGAGCGCGGCGAGTTGTTG 110585 28 100.0 33 ............................ TTGGGTTGCGACCATGAGTTCGGCGGCGGCCAG 110524 28 100.0 33 ............................ GACGAGCTGGACGCCGGCGAGCTTCCCGCTCGT 110463 28 100.0 33 ............................ TGCTGTCCGCCTCGGAGCGGTCAGTCACCATGG 110402 28 100.0 33 ............................ TTCGAGGTGGCCGGCCATCCGCTGCCGGAGTCG 110341 28 100.0 33 ............................ CTGTGGGACGACCACGACACGGCGACCCAGAAT 110280 28 100.0 33 ............................ TCGACACCGGACCGGTGCTTTGGGTGCCAGGTT 110219 28 100.0 33 ............................ GCGATGTGCAGCGACGTGGTGAGCGTGGTGTGG 110158 28 96.4 33 ..A......................... GGGCTTTCTCCGGGCCAAGTCCGGGATCGGGGA 110097 28 100.0 33 ............................ TGCTGACCCCGGGCAGCCGATTCCTCCGATCGT 110036 28 96.4 33 ..T......................... TCCTGACAACGCCAAGATCTGGCAGGACGCGCA 109975 28 96.4 34 ..............T............. TCTGCCGGGCCAGGCGCATCTGCCCGCCTGGCCC 109913 28 100.0 33 ............................ ACTCGAGCGCACCGGGCTCGGCAGCGGCGGGCA 109852 28 100.0 33 ............................ GGAATTTGCCGATTCGGTCGATCTCCTCGGCGG 109791 28 96.4 33 ..T......................... TCACAAACCGAACACCTGAGCGAGTGTTTTCAG 109730 28 100.0 33 ............................ TCCGTACCGGGTGATCGTGGATCCACGCCGCGA 109669 28 100.0 33 ............................ GTCGGTGATCCCGGCGTCCAGCAGCGACGACGC 109608 28 100.0 34 ............................ TGCGTGGAGGCTGAGGGTGTGGAATATCGCGCAT 109546 27 89.3 33 ....C..A......-............. CTCCGGCTGCGATTTCCTGTTCGTGGACGAAGC 109486 28 89.3 33 ..G...........T....A........ CTGGACTGCGCCCGGCAACCCGATCGCCGCGGC 109425 28 89.3 33 ........T.....T...........T. AGCAGTCAGGCGTCGCTTTCGCTGACGAGGCGG 109364 28 82.1 70 .....T.....C....T.........GA CCAACAGGACGCCGTCGGTCCGCAGACGGGGTGTCCCAGAGCGGTCGTTTCCGCGGCCGGTGGTCAGCAT A [109338] 109265 26 82.1 56 ..........A.T--.........C... GGTATTGATGCCGGTGATTGTCAACGCCCGAGTGTCGGTTATATTCGTACCGGGCA 109183 28 82.1 33 .....T.....GT.G..........C.. TAGGCGGGAGAGTCGATCAAGCCTGCCATTATA 109122 28 82.1 0 T....................G.AA..T | ========== ====== ====== ====== ============================ ====================================================================== ================== 50 28 97.6 34 GTCGGCCCCGCACCCGCGGGGATGGTCC # Left flank : GAAGCCGACCTCATTCAACCCGGCTTCGGCGAGCAACAGGTCACCATCATCGGCCCCGAACTCGAAACCCCGGCCGAATGGTGAGCCGATGACGGTCATCGTCCTTATCGCCGTCGCCCCGGGCCTGCGCGGCCACCTCACTCGATGGATGATCGAAGTGAACGCTGGCGTCTTCGTCGGCAAACCCAGCCGACGAGTACGAGAACGCCTCTGGGAACTCCTCGCCGACCGAGTCCGCGACGGGCAAGCCGTAATGATCGAACCCGCCAACAACGAACAAGGATGGGCCGTCCGCACTGCCGGCCGCGACCGCTGGAGACCCGTCGACTTCGACGGGCTACTCCTCTCAGCCCGCCCGAGAACACCAACCTCACCCACGCAGACCGACACCCCACAAGACTCACCCAGGCCGCGCAGCCGAGGCAACAGCACAGAGCAAAGCTTCGACCGAAGTGAATGAAAAAGTCACCACGGACGAATAAACATGCAGGTCAATAAGT # Right flank : CGCGCTCACGCACTATTTCGTTGACGTGTTCGACGCGCTAGACCTGCGAGCGCAAGTTGCGAGTACTAGCCGCACAGATCTGGCTGGCCCGGTGGACGTCCAGAAACTGCTCCCGTCTGTCGTCTAATTATCAGGTATTAGGCGTCCTGATTCAGGCAAATGCGATGGTCTCGCGGATGTTCGGCGGCATCGGCCCACAGCATGAGGCTGCGGCGGGGGAATGGCTGTGCGGATTCCAGGGCATCGATGGCGAGCGCCCATGGGTCCGTAACGGGCGTAGGGCACCGTATCGAACCTGCGCTGCGGCAGGTAGTTAGTATTTCGTCATGCCCAGCCTGCTCACACCCCAGTCCGAGAACTTCCCAGCGTGGTACCAGGATGTCGTCTCCAAAGCCGAACTAGCAGAGTCTGGGCCCGCGCGGGGGACGATGGTTATCAGGCCGACTGCTTACGCTGTCTGGGAGCGGATGCAGGCGGCTATGGATGGCCTGATCAAGGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121985-124330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXOO010000003.1 Nocardia speluncae strain DSM 45078 W9874_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121985 28 100.0 33 ............................ GCTTTGGCAGTGTCGAACGCGCTGCGGTACGCG 122046 28 100.0 33 ............................ TCCTGAGCAGTCGGAACCGACGAAGTAGCTTCG 122107 28 100.0 33 ............................ TCATGCACAGTGCCGAGGTCGAGCCGCCCGCTG 122168 28 100.0 33 ............................ CCCGCACTGGCCGCCGAGGCCAAAGTTTCGCGC 122229 28 100.0 33 ............................ TCAATCGGGTTATTGAACGGGTCTTTAACCCCT 122290 28 100.0 33 ............................ CAGCATCAGTAGGAACAGAACCACCAGCGCGGG 122351 28 100.0 33 ............................ TGAGGCCCGATCAACTCGGAGCGGTCACGCAGG 122412 28 100.0 33 ............................ GCCGAGGGTCGTCGCGGTCTTGCCGACGCCGCC 122473 28 100.0 33 ............................ TACGTCTGGGAGTATCGTCTGGTGCCGTGGTTG 122534 28 100.0 33 ............................ CCCGGACGCGATCAGCCACGCCCGCCTGGTGGA 122595 28 100.0 33 ............................ TCGCTGCTGATCAGCGAGTGCGCGGTCTCGGTG 122656 28 96.4 33 .........................C.. TGGTCTTCACGACAACTCGATTATTGATGTGTC 122717 28 100.0 33 ............................ TCCCTGTCGTACGGTTCGGTGTCTTCCCAGAAA 122778 28 100.0 33 ............................ CTGCTTTTCTACTGCGACCTTGTACGTAGCTAG 122839 28 100.0 33 ............................ GATCTGCGCGAGGACTTTGACGGGCTGGCGGCT 122900 28 100.0 33 ............................ GGTCATGACGCCGAGACCGAGTCCCCCACCGAG 122961 28 100.0 33 ............................ CGGTTCGAGCGGCTGTGGGCGTATTTCACCGGT 123022 28 100.0 33 ............................ CTCATAGTGGTGGGCAGGGACCCACATCGCGTC 123083 28 100.0 33 ............................ GGCGATGAGCCGGGCTTCGTCGTCGGTGACCAG 123144 28 100.0 33 ............................ TTCCGGGCTGGGAGCACGACTCCGCATGCCGCG 123205 28 100.0 33 ............................ TCGATCACGACGTCGTCGAAGATGCCGACCAGG 123266 28 100.0 33 ............................ GCACCAGCGGTCGAACAGGTTGGCCCGGGTCGC 123327 28 100.0 33 ............................ GTGAGGCAAACAACGCAAACACTGCATGACTCT 123388 28 100.0 33 ............................ GAACTACGCGAACAGATCTTGAAGGCTCGGTGG 123449 28 100.0 33 ............................ GCGTCTCGGGTCCGTTTCCTCTCAGGGGACCGT 123510 28 100.0 33 ............................ GACACCGTGGAAGCCGTCGAGGACCTTTACGAA 123571 28 100.0 33 ............................ GCAGACGATCCTCGACGCCGGACGTGAACTGGA 123632 28 100.0 33 ............................ GCGGCAGGTGGTCGCTGGCGGTCTGGGTCTCGG 123693 28 100.0 33 ............................ TCACATGGTCGGCGGCATTGGCGTTCATCTTGG 123754 28 100.0 33 ............................ TCGATCGCTGGTGTCGGCTCGGTCGCGAGCAAG 123815 28 100.0 33 ............................ TAGCGACTCACGCTTCTGTCGGCTTATCGTTTG 123876 28 100.0 33 ............................ TTTCCGGACTTGACGACGATCGCCCCTCGGTGG 123937 28 100.0 33 ............................ GAGTCGATATTGCCACCGATCGACTCCGGCGGT 123998 28 100.0 33 ............................ CCCACCGACGCTGCTGGGGCAACTGCTGACCAA 124059 28 100.0 33 ............................ CGACGAATACGCCGAGAAGTCGGTGCTGGGCGC 124120 28 100.0 33 ............................ TGCCGCTTGCCCCTCCACTGCGGCAACGAACGC 124181 28 100.0 33 ............................ GCACTGATAGATATTCTCGCCCTCGTCGGCTGA 124242 28 100.0 33 ............................ TCGACACCGGACCGGTGCTTTGGGTGCCAGGTT 124303 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.7 33 GTCGGCCCCGCACCCGCGGGGATGGTCC # Left flank : GTGCGATAACAACAGATTCGCCGTGCCACCGGCACGACCAGCAGACTTCCCCCACAACGCCCCCAACCAGGCCCTCTGCGGACCCGACAAGTCCTCCCACCCAGTCGATCTCGCATCCCCGTCAATCGTCATGGCGCCCACCATAAAAAGCCCCACCGACAGAAATAGCCCCGGAACCGCCCCGCTGAGCCACCAGAGCCGTCAGCTGCCGCACCAGCGAACCTACAAAGCCACAGAACTCCAGCCGGGAAACCACCGCCGAGTGCGAATCCCTGGCCTCATGGTCGAGGCGCCAGCAACCCGCCCGATAGCGTCACCCACTATCGAGCGCCTCTTTGTGAAGGTTGTCTCCCTTGAAGGCGTTGCGCGACACCGCTCACCCGATGGCCGGGAAACATGGCTGAGAGTAGCCTCGGCCACGTGTTCAGACACATAGATCCCGTCCAGGCGAAGTGAATGAAAATCCGCCACACTGCGCACATAAGACGAGGTCAGGAAGT # Right flank : GGGAGACCAATGTTATGTCACCGTGTCGTGCTGGCAGGGGACACGTTCTTCGACGACTCTCCTACCTTTGTTGTCGCGACGTCGCGAGCAGTCGGTCTTAGGCCAGCATATCCCGACGAGAAGTCGGAGTAGGGGATCACCGCCCCCGGCAGAGCCTGCCAACTGCCAGCGCAGGATACGAAGTCTCAGTACCACGGCGAATCCGCCACCTCACCGCCACACATTCTGAGATTCCGTCTCAAGTTTCGAGGCCCTACACCGGCGGCTTACCGTTATGCAACGACGAGGCTGAATTCTTCCGCTTGGATTCCAGCGATGAATGCGGCCCATTCACCAGGGGTGAAGACCAGCGTCACACCGGTGTCGCGGCAACTCACGGTAATCCAGCCGTCGTTTCGACGGTCGATCGTAGGCATGCCCGCGGTGGCTTGCGTAGTCGGGTCGGTCGAGTGATCGCAGAATACCGTCCACAGATCGGCAGGGATCGAGATCTGCGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //