Array 1 1565778-1564612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWZL010000001.1 Bacteroides fragilis strain FDAARGOS_1511 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1565777 35 100.0 33 ................................... CACAAACCGCCGATAGTGAATGGACTAAGCAGT 1565709 35 100.0 36 ................................... ATATGATAATCGACTGGGAATGTGCTAGATACACTA 1565638 35 100.0 36 ................................... TCAAGTCACTTCCGAGGGTGCGCAACTGATTGATGT 1565567 35 100.0 35 ................................... AAAAAACTTTTCCCGGCTAAATAACAGAATTATTC 1565497 35 100.0 40 ................................... TTTCTCAGAAACTTGGGTGATGCAAAATCATCTGGATTTG 1565422 35 100.0 36 ................................... TCTGGCTGATGATGTCTTTTACAGTGTTCGGTTAAT 1565351 35 100.0 36 ................................... GTCGTTATAAAAGAAATTATATTCCCCATAGAGTTT 1565280 35 100.0 37 ................................... TCTTTCATTTTGGATGAAGAAGATGATGATGACTTTC 1565208 35 100.0 37 ................................... GCCAACTAAGAGTTACTTTTGACAGCAAAGGGAATGT 1565136 35 100.0 33 ................................... AAAGAACTTTGACAGCAGAAGGAAAAGACATGA 1565068 35 100.0 35 ................................... TCAGGGATTTGAATGAAGACCCTCACAGCTATAAT 1564998 35 100.0 34 ................................... CCTTCAAACAAAATGTTTCAAATTAGGCAATAAA 1564929 35 100.0 34 ................................... GTATCCTGCCATCAGTGAGGACAGTACTTATCTT 1564860 35 100.0 34 ................................... TTTTGAAAGGTGTGATATGCTTCCTTTCTGAGAA 1564791 35 100.0 37 ................................... TTCGCATATCGGCGAGGCTTTGACGGCTCTCATGGCT 1564719 35 100.0 38 ................................... CGGTTTCAACGTTGCCTATGAAAAACTGGAAGATGCTT 1564646 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 17 35 100.0 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAATAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 3545863-3546369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWZL010000001.1 Bacteroides fragilis strain FDAARGOS_1511 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3545863 47 93.6 29 ...A......A..........................T......... AGTTTTCGTAGCTTAGTTCATTCAGAATA 3545939 47 100.0 30 ............................................... TCAGGAAATAGCACAGTATGAAAAACATTA 3546016 47 100.0 30 ............................................... GTAGGTATGAAAGAAATGCTTGGCTTCGTG 3546093 47 100.0 29 ............................................... AAAAGAAGGTAATTGACCAGCAGAAACGG 3546169 47 100.0 30 ............................................... AGCGGAGAGAGCTAAAAAGGGAGGTGACCG 3546246 47 100.0 30 ............................................... TTGCCGTGCAAGCTCGTTTATTTCTCCTAT 3546323 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 99.1 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATCGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTGAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGTTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATCGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //