Array 1 110731-107076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAH01000020.1 Porphyromonas sp. COT-108 OH1349 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 110730 30 100.0 35 .............................. GTGATAAAGCCCCCCCCGTCAGGGGGGCTTTTTCT 110665 30 100.0 34 .............................. AAGGAAAAAAAGAAGTCTTTTTGGACTTATATTA 110601 30 100.0 35 .............................. CTCGCATGAGGTCAAAACCTCTTTTCCGCTTGGAA 110536 30 100.0 35 .............................. ATTCAATTTGGACCCTGCTATGTTTTTGAATATGA 110471 30 100.0 36 .............................. AAGATGTACCGCAATTCGGGTGCCTGATTTGGCAAC 110405 30 100.0 37 .............................. TCTTACAATGAAGCTTCAAATGAGATTGTTTTATACT 110338 30 100.0 34 .............................. TATACTAAGTGTGGATTCAGACCAGCTCTGGCGA 110274 30 100.0 37 .............................. CTCTCCGTGCTTCTTCTGCATGCCGTAGTCGTTGATG 110207 30 100.0 37 .............................. GTTGTCCCCTGGATATGAGACTTCACGCTCTTTCCTG 110140 30 100.0 36 .............................. ACGCTCTGTCGGATGAGAAATTTGTTTCTTATGTAC 110074 30 100.0 37 .............................. AAGGATGCTACTTTTAATAAGTATCTCGAAGAGTTTA 110007 30 100.0 38 .............................. GACGACCCTCGTAAATTTCCTACTCTTGCGGATTATAA 109939 30 100.0 36 .............................. AATGATTATACAGTTAATAGACCACAATACCTCGGG 109873 30 100.0 36 .............................. GGTTGTCTAGTGCGAAATTCGTTCAAGCGGATGAGT 109807 30 100.0 35 .............................. ATTCCGTCGCAAGCTTCTACTTTTGATATTGATGC 109742 30 100.0 35 .............................. TTTGCAGGCTGTTTTTACAACTTTTGCTAATGCTT 109677 30 100.0 38 .............................. CTGGATTCTCAAGTTGTTGTTCATTCACCCACTCCAGT 109609 30 100.0 37 .............................. GGGACATCTTTTCTTTGCGTCTCTACCTGCTTGATTA 109542 30 100.0 36 .............................. AGTTTGAGTATGATGTGAATTTGTTCGGGATTTATG 109476 30 100.0 35 .............................. ATATGAGGGTGAGATGCTTCTTCTCACTCTCATAT 109411 30 100.0 36 .............................. TTTGCTTATTCAGAGAATTTGTCTTTTGAAATGTAT 109345 30 100.0 38 .............................. AGCCTTAAACATTATCAAATGTTCATTCACTATCTTCG 109277 30 100.0 35 .............................. TGAATATAGACAAGGAGCCGCAGGCTTTCATATCT 109212 30 100.0 35 .............................. AAGCAAATCCCCATTTTATTTTATAAACAGCGAAG 109147 30 100.0 36 .............................. ATTCTCCGGGGAACACTCCTTGCATAAGTGTGAGCT 109081 30 100.0 36 .............................. TCTTAAATGCCCGCTCCTTGTCTCCGGACAATTGAA 109015 30 100.0 35 .............................. ACCTGTTCATCCACGTGGGATGGATATAGGCTATA 108950 30 100.0 36 .............................. GGATGAGGACGCTGAACACTTCGCTCATCAGTTCCT 108884 30 100.0 36 .............................. TCGCATTAAAATTTTGTCTTGTGCAAAAGTCTGAAA 108818 30 100.0 37 .............................. AATTGTTACAATTGAAAAATGCTAATTGGCGACCCGA 108751 30 100.0 36 .............................. ACCGAAACGGAGTCCGTTCTTTGGCAGCTGATTTGC 108685 30 100.0 35 .............................. CTGATATTAGTGTTATTTCTTCTACAACATTTCCC 108620 30 100.0 37 .............................. AAATGATTTCTTTTTTTCTTTTGGCAAAAAGACACAA 108553 30 100.0 36 .............................. AAGATTTTTTGGAATGCAAACCGAGTCTCGCTCCCT 108487 30 100.0 35 .............................. AGTTGGTAGTTTTATTTCTACACAATCAGCAAATA 108422 30 100.0 35 .............................. CGCTATTATATAAAGAAGATTTTCACTGACGAAGA 108357 30 100.0 36 .............................. ATCTCATTTTTGTGTGTGTAGATGTATCGCGGTATC 108291 30 100.0 34 .............................. ACGAGAGCGAATACAATCGTAGCAAACGCCACAA 108227 30 100.0 35 .............................. CTTCAACAAATGAACCGCTTGCGAGATGCTGGATT 108162 30 100.0 38 .............................. GATGGGAATAATCGGGAAGACGACACTTAGCGATGAGA 108094 30 100.0 35 .............................. CGAATTTCTACGAGCGCGTACGCAGTCGTAGCAAA 108029 30 100.0 37 .............................. TCTAATCAGATGCAACGTATTAAAGATGCTGGTCTTA 107962 30 100.0 35 .............................. TTCGCCCCTCGTATGCTGCAAAAGGGCGTAAAGTT 107897 30 100.0 37 .............................. TGCCTATCACCTGGTGTATAACTACTTTTATAAAGAC 107830 30 100.0 37 .............................. TTTGCTTATTCTGAAAATCTTTCTTTTGAGATGTATT 107763 30 100.0 35 .............................. AATGGATTCATGGCACATCATACACCTGCTACAAA 107698 30 100.0 36 .............................. GTAGGGTGCATTTGCCCAAGGTGCGAGATTCCATGA 107632 30 100.0 37 .............................. CTTGGTACCCTTGGTGGTAAATCTGTTACTTCTTTTG 107565 30 100.0 36 .............................. AATCAGGCACCATCCCTTTCCCAGATTGTTGGTGCT 107499 30 100.0 36 .............................. AAACCTTGTTCCGTTCTTTGATGATGTTGATACGAT 107433 30 100.0 36 .............................. CTGACAACGCGCTAACCCGCTGGCTCGGTCGTGTCC 107367 30 100.0 37 .............................. TTGAAGTCTGATTATCAAAAACTCTTGAAGCGATTGA 107300 30 100.0 36 .............................. GGCAACAACAACTTATTGTTTGCCAGATCGCGGAGG 107234 30 100.0 35 .............................. AAGAGGCGTTTGAGGGGCTTGGCGGTAAAACCTCC 107169 30 100.0 34 .............................. CGTTCTATTATCTCTCTTCTGACAGAGAAGAGAG 107105 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ====================================== ================== 56 30 99.9 36 CTATCAATCGTACCTTAGTGGAATTAAAAC # Left flank : ACTCTTAAGGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCGACGGTTCGAATCCGTCATTCTCCACAAAACAAAGAGAGTCGCAATGTTATCTGACACTGCGACTCTCTTTTTATACCCTCTTTCTACTCCTAAACTTATTAAGATTCTGTTTAAGCATTTAATTTTATTGTCTTAGAAAAGGATATTCAAATACGAGCCACATATCCAATTCTTGATTCTCTTTAATTAAGTATCTGAAAATAAATCAGATAATTGGAATAAAATTCTCCCTTTGTCGTCTATCTCTACATTTGACCTGCATTTATTTCCCAAATTCTCTCAGAAATAGTTCCATAAAATCTGATTATCAAATTATTAGAGTTGTTGTCGACCTTCCACTCTTTTTCTATTATTATAGAACGACAACTTTTCCCTAAAATTTATCCCCTCTTTCTCTTCTCTATCCCTTTGTTTGCATCACTTTTTTCATGTAATTTTACGG # Right flank : AAATCAAACAGTACTCGCTTGGCATACCGTAAGATCCGCCAGCGAGTCATTTTTTTATATAAAATCAGAACAATAAAACAGGGACGAAAGTACAACGCTCTCGCCCCTGTTCTATAATAGCCCGATCTGGAAGTCTGTTCAGAAAGGTCTCTTCGGTATTCTTGCCTTGCCTGTTGCGCCTGTCAGGGCGGTTTTAATCTTCTTCTTGAGGTCTTCTACCTTTATCGTCCACTCCGGCTTGAGGTGTGCATAAGTGATGCTTATCCAATCTTCTACAGCTCTGCATACAAGATAATTCATGTATAAGTGTTTGCAGTAGATTTGCTGTTGTGATGGAAAATTTATCGTAGACATTCATTGTTACATGATAAGACTCCGGAACATGGAACTCATTAGTATATTCGCTCTTGTCGTCCACTTCATCTTTTGTTATTCTGTAAAGTAGCTCGACAACTTCATCAAAAGCAAGATTCAAGACCCTTGTAACTCTGTCGATGTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCAATCGTACCTTAGTGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2367-2773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAH01000003.1 Porphyromonas sp. COT-108 OH1349 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2367 29 100.0 34 ............................. CGCTTTGACATCGTTGGGCTGCTACTCTAACAGT 2430 29 100.0 34 ............................. GGCTTTGAAAACGTTGTCCTGCGAGTCTAACAAG 2493 29 100.0 34 ............................. TGCCTTGACTTATTTGGACTGCGAAAAGAACTCC 2556 29 100.0 34 ............................. CGCTTTGGAACATTTGTCCTGCAGCCATAACTCC 2619 29 100.0 34 ............................. CGCTTTGAGAACGTTGTCCTGCTCCCATAACAAG 2682 29 96.6 34 T............................ CAAGTTGGAACAGTTGGAGTGCTACTCTAACAGG 2745 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 7 29 99.5 34 CTCACCTCGCTGGATGTGAGCAAGAACAC # Left flank : AATTCTTTTGCTCGAAGAACCCGAATCTAAGCTCCTTGAAGATCTCGAGCAGCATAAATGATAGGTTGTGGGTCAACGGCTGTAAGCTGAGCGCGGAGACGCTGAACGAGATATTCCGCACACTTCCCGATGTAAAAGGGCAGACAGAAGGCGAGAAAGAGCTATATATCAAAGGTAATCCGGGTACGGCGGCGTGCAACAAGAAGATAGCCAAGGACAAAGGCTGGAAATTGGATGTCGGAGATACTCCTCCTCCTCCTCCTCCTGCCGGCAACAGCATGACGATGACGACAACGAAAGCCGTCGGCGAGAAGATAAAGATTTTGATCAATGCCGAGCCGGCAGACCGTCCGAATGTCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTGACCAGCTTTAACTTCAATAAAGAGTACAAGCTCGGCTCTCAGACCATTACGGTGTATGGAAAGGTAACCGCGTTGGGCTGCTACTATGGCAGT # Right flank : CCGCTTTGAGACGATTCTCCTGTGAGGGTAACCGGAGTCTAAGCTCCTTGAAGATCTCAAGCAGCATAAATGATAAGTTGTGGGTCCGCTACTGTAAGCTGAGTGCGGAGACACTGAATACCATATTCCGCACGCTTCCCGATGTAAAAGGGCAGACCGAAGGCGAGAAGAAGATCTGGATAGTAGACAATCCGGGTACGGATGCGTGCAACAAGAAGATAGCCGAAGACAAAGGGTGGACGGTTAATATTGATTATGATTGAGGGGAATTTCCCTCACCCCGAAGTGGCGGGGCGTAAAATATTGTAGACAAATTCGGGCAGTGCCGGTGCGATAAGTGCCGGCACTGCTTTTTTTGTGCCGAGACGGAAAACCGGAATCGGGAAAAGAGAAAAGGTCGGTTTCGGAGAGCATGAAAATTTCGTACGTACAAAAAAAAATTTATGTGCGCACGAAAAAAAATTTACGTGCGCACGAAAAAAAATTTCCGTAGGTAAGAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACCTCGCTGGATGTGAGCAAGAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 160762-162122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAH01000034.1 Porphyromonas sp. COT-108 OH1349 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 160762 37 100.0 37 ..................................... CAAATTCAACCTTTACATTCACAGCCTCAGATAGACT 160836 37 100.0 36 ..................................... ACCGCTAGCGATACGAAACAATCTACTACTTGAATT 160909 37 100.0 37 ..................................... AATTCAGCAGATACGGTAACATTACTCTCTGGCATCT 160983 37 100.0 39 ..................................... GTTCGGGGTCTGGAATCTTCTCAAATTGAGCACTGATTG 161059 37 100.0 38 ..................................... GCAGTTACAGTTACATCACTTGATGGCATCACAAAACT 161134 37 100.0 33 ..................................... GCGCTTTTTGCAGAAGTGTTATATGGTCGAAGG 161204 37 100.0 39 ..................................... AGAAAGGAATGAGTGGCTTCAAATGGAATTTTCAGCCTT 161280 37 100.0 37 ..................................... GCAAGATCCTTCTTCTTGATAATCAACTCAAACTGCT 161354 37 100.0 37 ..................................... TTCTCAGTCCACTTCACGAATCTCCAGCCTTGAGAAG 161428 37 100.0 36 ..................................... TCAACTTTTACCGTTTCATCTTTTGAAAGAGAATTT 161501 37 100.0 35 ..................................... TCAGAAGAGAGGTTAAGACCTTCCGGTAGATTTCC 161573 37 100.0 33 ..................................... GTTGAAATCACGGGGGCAAGATCCTTCTTCTTG 161643 37 100.0 39 ..................................... AACGATAGCCCAAGTTATCGGAGCTGTTCCCTCAGCTTT 161719 37 100.0 37 ..................................... AGAGAATCTCTACTCACACTCTGCGCAAAACCCTTTC 161793 37 100.0 39 ..................................... CAAACTCAGCCGATACTCTCACATTGCTTGATGGCATCT 161869 37 100.0 33 ..................................... TGAGAAGGGGATGCGTTAACCGTTACCTGAGAA 161939 37 100.0 35 ..................................... GTTCCCTCAGCTGAAAGTTGGAAGGAGTAGTTTTC 162011 37 100.0 38 ..................................... AGAAGCATCAGATTTATCTCTGATGGTTAATACGACAA 162086 37 81.1 0 ...........C.........T....C....TT.C.T | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.0 37 GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Left flank : CACACCGTATCGGGTAACGGACAGATCGTAGCAGAGCAAGGAGATTCCCTTAAAGAGATGTCGGTTTCTTCTTTCCGGGAACGGAAAAGAAGCCCTCACTCCTTTGCTCTTGTTGTTATAGAGGAAGAGGGTTCTGCTATCGGCATAAGCAGGGATACTATACTGATTCGCAAGGATAAACGGATAGTGAGAGAGCTGCCGGCTCCGAAAGTAAGGGAGATCTCTATAGAGGCAGAAGGTGTTACTCTAAGCGGTAACATGATAAAGTACTGCTCCAAGAACAATATCCTCATTCTTCGGAACGGAGAGCCTTTACTTCTTGAATAGGAATTTTAGATAGCCGGTGGGATATCTTTGTTATTCAAGAGAGTATAATCTTTCTATGAGATATATTGACGACATATGCGCAGTTATATATCGGTATTTTCGAAATTATTTTGCTTGTTTATAATCAGAGAGTTGCGAATTTACTTTTTTTGTATATCGTTGATAATCAGATT # Right flank : TCAAATTGATAAGTCATAAAGTTGAGATAAAAGGGTTCAGAAGAATGATTGAAAGGGGATAAAAGATGGGGTGAACGTGTAAAGAGAGGGAGATGAGGGCTTGAATGGGAGAAAGCAAGGCTTGAATGGTACAGATCGCGGTTTGATTTTTAGAAATCAAGCCGCGATTTCTTTTTCTTAATCCGTTCAATCAAAGATTTAGACGTGATCAGAGAAAGTTTTTAAGCCGTATATTGTGTTTCGGGAAAGGGGAGAGAGGGTGTCGGAGGGCGCTCTGTCGGTTAGGGGATGAGGCATGGGAGACAGGGAGAGCATTTTGATTTTTGCTTCCGGAAGTCGGTTTTTAGTCGTATTTTTGTGGTAGAATCAAAAAAACAGAGAGAAAGATGCAAAAACCATCCATACCCAAAGGAACAAGGGACTTTCTTCCTCACGAAATGGAGCGGAGAAACTATATATTCGAGACCATAAAGAGCGTGTTTCACAGCTTCGGTTTCCGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //