Array 1 1819-3003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQA01000115.1 Leptospira weilii strain 56679 Contig115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1819 29 100.0 32 ............................. ACTCACGAAGACTCACGAAGACTCACGAAGAC 1880 29 100.0 32 ............................. AAAAGTCCGAAGACAAGAAAATCTTGAAAAAA 1941 29 100.0 32 ............................. ATGATTTCGTTCAAAACTCCTCTTCCGGTAAC 2002 29 100.0 32 ............................. ACAAGACTTTCCGGTTACGAAACTCGCAAGAA 2063 29 100.0 32 ............................. AAGAAAAGGGGGAGCTATGCAAGTTCAAGAGA 2124 29 100.0 31 ............................. AACTCTCAAACGCAATGGGCAACGACCCGAA 2184 29 100.0 32 ............................. GGAGATCCTAAGTGAAACAGAGTGAGAAAAGG 2245 29 100.0 32 ............................. GAGAATGCTCTATTAGATAAATTCGAGGCCTA 2306 29 100.0 32 ............................. TGGTTGTTTGTTTGCCTTTTCGTTTTGGGTGC 2367 29 100.0 32 ............................. GAGAATGCTCTATTAGATAAATTCGAGGCCTA 2428 29 100.0 31 ............................. ACGTCGGCAATATGGTTGGCCAGGTCGCACA 2488 29 100.0 32 ............................. GAATAAAATTATGAAATTAGAACAAATATCAA 2549 29 100.0 32 ............................. GAACACGTTTTAATAGATAAATTCGAGGCCTA 2610 29 100.0 32 ............................. GAAACTCGACGTGCTCCCTAATCCATTCCTCT 2671 29 100.0 32 ............................. CGACATAAAAGGCAGTAAGAGGAAGGGATAAT 2732 29 100.0 32 ............................. TTCATTGAGCATCACGGCGGCGGAGAGGCGTA 2793 29 100.0 32 ............................. TTCTAAAATACGAGTGAGGTAATGGAACTATT 2854 29 100.0 32 ............................. GCGGAAATTTTAAATCGTCAAGAGCATTCGCC 2915 28 93.1 32 .......A.............-....... ATCTATTAAATGCGTCAACATTGACGCATTTG 2975 29 86.2 0 .......................A..ATT | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TGGGGTTGAACCGGCGCTCTCAATCCTACAAATACTTGGATCCGAAAATAAATCTGTCGGAATTACGACAAAATCCCCCGTGAAACGATCGGCCCCACAACGCGCCCTTTAGAAAGCGTTGTGCCCGAGTTTCCCTTATTTTTGGGTGGGGGTGGAAAGACTCGGGAAATTTTTCTCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCAAGCGTTGTGCCGAGTTTCATCTAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGAGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAGC # Right flank : TTTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGGAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAGTGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACGGACAGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18232-17775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQA01000117.1 Leptospira weilii strain 56679 Contig117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18231 29 96.6 32 ............................T ACCTTTCGTTTTGTAGACAACCCCTTTTTCTA 18170 29 96.6 33 ............................A GAAGGGATTCCGTTTCGCCTTGTTCATCCAAAG 18108 29 100.0 32 ............................. TAAATACCACGCATCAACGGTAGAATATACAC 18047 29 100.0 32 ............................. AAGAGCGAATCGTCTTAAAAGGTTATCAGGGC 17986 29 100.0 32 ............................. AAGAGCGAATCGTCTTAAAAGGTTATCAGGGC 17925 29 100.0 32 ............................. AATATAAAAAACAGAATAAAAGAAGTTTTAAA 17864 29 100.0 32 ............................. TATTCTCTGGTTGGATCATCCGCTAAAAATTC 17803 29 89.7 0 ..........................AGC | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAAAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCCGGGGTCTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAAGGTTACGCTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCGATGGCCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCTAATTCCCTTCTTTTAGAAACAGGTGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGT # Right flank : TAGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAAATTACGAACTTTAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCATAACGAAGCGTATCGCAGAAGAATAAACTCATAAGACATACAAGGAATCTGAATCCAATTCTAAAAATCATTTCCTTTCAAGCTTTCTTGAATCGTTTTAAACTTTGATATAAATCTTCCTTTTATCTAAAAAACTTAAAATTCCCCACCAAACCGACAAATGAAGAACCGCATATAACAAAGATGCGAGATACGGATCTGTAATAAAAACAAGTTTAGAAAAAAACCAGGCTTTGACGCCGACCTGTTTTCCATTCTCCGTCATAATTGTCCAAAGGTTAAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGAAAAAAGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14515-15214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQA01000136.1 Leptospira weilii strain 56679 Contig136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14515 29 100.0 32 ............................. AAGAGCTTCACAAATCACTTCAACAGTATGGA 14576 29 100.0 32 ............................. AAACTTGATTCTCAGATAAAGCGAACCGAAAC 14637 29 100.0 31 ............................. ATTTTTTGCGGTCGCCATTTCCATGTATCAC 14697 29 100.0 33 ............................. GATACAACGTTTCCAATACCGCAATCAGCAAAG 14759 29 100.0 33 ............................. GATACAACGTTTCCAATACCGCAATCAGCAAAG 14821 29 100.0 32 ............................. ACCCCGGATTAGATCAAAAGAAAAAGATTTTG 14882 29 100.0 32 ............................. CAGAGAGGGGACAATTGGATCTCGAGGATCAA 14943 29 100.0 32 ............................. TATTTGTTTGTTGATTCAGCTAGTGCTGCTAT 15004 29 100.0 32 ............................. AATACATCAAGTTGAATGAAATTGCTTCAATC 15065 29 100.0 32 ............................. CTAATCGAGGGTTAATACAACGCAATGTCGCG 15126 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 15186 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.3 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGT # Right flank : TTTCAGTCAAAACAAATAAAGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //