Array 1 2239-683 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZT01000015.1 Escherichia coli strain 17-1BK entry15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2238 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 2177 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 2116 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 2055 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1994 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1933 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1872 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1810 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1749 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1688 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1627 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1566 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1505 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 1444 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 1383 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 1322 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 1261 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 1200 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 1139 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 1077 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 1016 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 955 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 894 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 833 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 772 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 711 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42114-39523 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZT01000016.1 Escherichia coli strain 17-1BK entry16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42113 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42052 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41991 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41930 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41869 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41808 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41747 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41686 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41625 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41564 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41503 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41442 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41381 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41320 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41259 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41198 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41137 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41076 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41015 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40954 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40893 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40832 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40771 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40710 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40649 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40588 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40527 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40466 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40405 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40344 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40283 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40222 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40161 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40100 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40039 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39978 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39917 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39856 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39795 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39734 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39673 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39612 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39551 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //