Array 1 35086-31582 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVJ01000009.1 Bifidobacterium pseudolongum subsp. globosum strain 1565B Contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35085 29 100.0 32 ............................. CTTGATTTCATGGACGACACCGACCGGCGTAA 35024 29 100.0 32 ............................. GAGGACTACATGGTTTTCAACGGGGCCGCCGA 34963 29 100.0 32 ............................. GCGTGCAGGATCGTGGACACGTCACAATCCAA 34902 29 100.0 32 ............................. GTGTCATGGGCCACCGAGACGCTCAAGAAAGG 34841 29 100.0 32 ............................. ACCATTGCCAGCCCTTCTGGAATGGTTGGATG 34780 29 100.0 32 ............................. GCACCATTGACGCCAGGAAGCAGCGTACTGGT 34719 29 100.0 32 ............................. TGTTGCACCATGCCGGTCATGGCCGAACTGGC 34658 29 96.6 32 ............................T TGTTCGGTTCGCCCATCCAATATGTTTCGGGT 34597 29 96.6 33 ............................A CAGCGCCCTGCAGGCTCGGCTCGCCACAATCGG 34535 29 100.0 32 ............................. CTCCTCAAGGACGCGTTCGGCATCGTCTGCGA 34474 29 100.0 32 ............................. AAATCGACCGTGACCGCGACGGAAAATGGCCG 34413 29 100.0 32 ............................. GCGCCGCCCTTGACGACCGCGCCGTCGAAAAA 34352 29 100.0 32 ............................. CCGTAACGACGCATAAGAGAATCAATGCGCTG 34291 29 100.0 32 ............................. GTGCCGTAGACGTCCACGAGCGCGGACTTGCC 34230 29 100.0 32 ............................. AGGACGCGGGCGGCACCACGCCGGACACCAAG 34169 29 100.0 32 ............................. GCGACGCTCGTACACACTCTGTTGAGGTTGCG 34108 29 100.0 32 ............................. GCGCCGATGAGTTTGACCATCGCGTCTCCTGC 34047 29 100.0 32 ............................. ACGCTGCCGCGCGCGTCCACGAGGTCGGCGAG 33986 29 100.0 32 ............................. ACTTAGAAAATTCGTGTTTTCACCTCCCCTCT 33925 29 96.6 32 ............................T TGGCCGACGCCATCCCCGGCGCATCGGGCAAA 33864 29 100.0 32 ............................. GCGGCCGTCACGCCCGACCATGTGGACAGGGG 33803 29 100.0 32 ............................. GCCGTCATAGAACTCGCCTACCTGCGTATCCG 33742 29 100.0 32 ............................. GTGTCGAGCACGTCCTTGCCGTGCTTGAACGC 33681 29 100.0 32 ............................. ATGGGACTAGCAGAGTTGCGAAAAAGTAAGAA 33620 29 100.0 32 ............................. ACGAAACCACCCACCATCCAATCGTTCACCGC 33559 29 100.0 32 ............................. AATTCTACAATTTCCGCGTAACGTTTCACGCT 33498 29 100.0 32 ............................. ACGTCGCGGCGCTCGTCCGCAAGGATACGCAC 33437 29 100.0 32 ............................. ATCGCTTTCAGCTGCGCGAACTGGGCTTCGAG 33376 29 100.0 30 ............................. AGAAAAAAGGAGACGTTTTTCAAGGATATT 33317 29 100.0 32 ............................. TGCTGCGCGTCGTCCACATTGTCCATGCTCGG 33256 29 100.0 32 ............................. CTGTCGAGATCATGTTCGAACGCGACGAGCAC 33195 29 100.0 32 ............................. ATCGCCTTGAGCTGCGCGAACTGTGCTTCGAG 33134 29 96.6 31 ...............A............. TGCCGCTCGTCTCGTCGATCTCGGTCGCGAC 33074 29 96.6 32 ...........................T. TTCCTCGACGGCAGCCAGGAGATCAACACCAC 33013 29 100.0 32 ............................. ACACCAAAGAGCGTGTTGAACGCGCTCGCAAG 32952 29 100.0 32 ............................. GCCCGGCAATGCGTTGAAATATTCCTGCTGTT 32891 29 100.0 32 ............................. GTGTACGGCGGCAGCGACCACACCGACCCGTA 32830 29 100.0 32 ............................. TGGCGGTGGGCAGACCGTCGAGGCTGTTGCTG 32769 29 100.0 32 ............................. TCAGGCTTCGTCGCGCCGATATTTTCCGGCAA 32708 29 100.0 32 ............................. ACGTAAGAAAAAGACTAAAAAATCCTCACCTA 32647 29 100.0 32 ............................. ACGCACAGACCGCGACACCACCCACACCGATC C [32638] 32585 29 100.0 32 ............................. TGAATGCCGGCAGGTCGATGGGGCGGATGAGG 32524 29 100.0 32 ............................. GAACGCCAGATGGAACATTACGGGCGTGATTA 32463 29 96.6 32 ..................A.......... TGTACCCATATGCGATGCTGTGCGCGTTCGAT 32402 29 100.0 32 ............................. GGAACTCGACCGTGGAATCCTCCGGAATGGTG 32341 29 100.0 32 ............................. CTGTTGTGCGAGCGTGGGGGCGGCGGCGGCGA 32280 29 100.0 32 ............................. TCCGCGACACGCCGCTCGTACACACTCTGTTG 32219 29 100.0 32 ............................. AAGCCGCCCATACAATCCACGCCGTCCAAAAC 32158 29 100.0 32 ............................. AAAAACGAACACCAATGGCGTGCCCATGTGGC 32097 29 100.0 32 ............................. ATAGACCACATCACACTGCACATCATGGCAGG 32036 29 100.0 31 ............................. CCCGTGCTGTATCGACGCCATTTTACCCACC 31976 29 100.0 32 ............................. GCATGCGCGACCAACTGCACTACGGAGACACC 31915 29 100.0 32 ............................. CGGGTGACGCGGGCGATGCTGCAGGATTGGGT 31854 29 100.0 32 ............................. TACACCACAGGACGCGGCGGGCACAAGATAGA 31793 29 96.6 32 ............................T ACGGGCCAAGCATCGCTGAACAGTGGGTGAAC 31732 29 100.0 32 ............................. CCGTCGCGCAGGGTGCGTGACTGGATGTCGTG 31671 29 96.6 32 ........................G.... GCGTGGGCGAAACGAGAGCAGGAGCTGTGGCG 31610 29 86.2 0 ..A......T....T.............G | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.3 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GTGCTCGAAGACGAGTGGAATGAGGAGCCATGATAGTCATCGTTCTCACTGCATGCCCTTCAGGATTGCGCGGGGATGTGAGCAGATGGCTACTGGAGATATCTCCTGGTGTCTTTGTGGGACATATCAGCGCTCGTGTGCGTGAGAAGTTGTGGGAGAGAATCGTCGACACGCTTAAAGACGGTAGGGCCATTATGGTGTTCTCTGCGAGAAATGAGCAGCATCTTGACTTTCGTGTGTTCAGGTCTGATTGGAAGCCAGTGGATTGTGATGGATTGCAATTGATTAAACATCCGAATGAGGAAAAACACGATACCTATGCGGGAACGAAACGGCATGGGTGGAGCAACGCAGCCAAATATAGGCGTGCGAAGAAATATCGTGGTTAGGCTTGTACATTTCGTAGCCGCCTCCTTCTCATTGAGACCATGAAGAGAAGAAGTGAAGGAAAACGGTTTTCTCCTCATTCTGATATGTTGGAATTATTGGGATTTCATAGC # Right flank : CATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGAGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACAACTCGTTCTCTATGGCGATGAGAAAAACGCCGAGGTCATCAGGAGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCTCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCGTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAGCTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCAGCCCACGACATCTCCAACAACTGACCCATATTCTCCCATACACGAAAGGCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //