Array 1 80558-79979 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXI01000002.1 Cronobacter sakazakii strain MOD1-H2399 H2399_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80557 29 100.0 32 ............................. CACCGCCACGCCAAACGCACCCGAAATAGATT 80496 29 96.6 32 ............................A GCGCCAGCATTTTGCGCTTGTCCTCTTCGGTC 80435 29 100.0 33 ............................. GAGTTGTTTACTCACACCCGGCGTCGCTTCGAC 80373 29 100.0 32 ............................. TATTCCATTCTACGATTGGCTTAACATCACTG 80312 29 100.0 32 ............................. CCAAACGCCTGGACTTGTGGTACGAATGGATG 80251 29 100.0 32 ............................. CCAGACTTCATCGGGAAATAACCAGCCGTGGT 80190 29 100.0 32 ............................. CGTTAATGCATTTGCGCTGCCACCAGCCACAC 80129 29 100.0 32 ............................. ATTGGGCGTTAACGTCGCTAAATTATCCTGAG 80068 29 96.6 32 ............................A ACTGAATTATCGAACTTTCTGGCCCGTTTTCA 80007 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGATTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTTTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106683-106227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXI01000002.1 Cronobacter sakazakii strain MOD1-H2399 H2399_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106682 29 100.0 32 ............................. GCGGCGGCTTACGCGCCAGCCGCTGCGATGGC 106621 29 100.0 32 ............................. TAACCAGTCAGCCAGTTTTAGAAACGCCTCCC 106560 29 100.0 32 ............................. GCGCGGCGTTCGTAGAGGTTGCCGCAGGACAT 106499 29 93.1 32 ............C..........G..... GGCGGGAGTTTGCGCGGATTGTCGGTTCCGTG 106438 29 93.1 32 .C..........C................ AATTGCGCAGCGGCAGCGGCGATCCGGTTATT 106377 29 93.1 32 .C..........C................ CCAGTAACGCTTTTTTAGCTGTCAAAACGAAA 106316 29 96.6 32 ............C................ CCCGCAGAGCACTCACTATCTCGACGTTTCCC 106255 29 89.7 0 .C..........C.........C...... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 CTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCATCCGTAATAAACCGCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGTTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //