Array 1 671317-672863 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019372.1 Staphylococcus pseudintermedius strain SP79 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 671317 36 100.0 29 .................................... TTTTAATCACTATACGATTATGAAAGCCT 671382 36 100.0 30 .................................... GAACAGTTTGATTTACCTTATCGCTATATT 671448 36 100.0 29 .................................... TGTTTCTGTTTGTTACTTTTATTCTGTAC 671513 36 100.0 29 .................................... TGAACATTACCGAACCCTCTTGTGATTAA 671578 36 100.0 30 .................................... GCGAACAACGGTATGCTTACGATGTTAGGT 671644 36 97.2 29 ...................A................ TCGCATTAATCAAGAATCAAAAGGGTTGC 671709 36 100.0 30 .................................... AAAAAGCCAGTACAAGGTTCTATGGTTTCA 671775 36 97.2 30 ...................A................ ATTAAGAACAATATAAATGTATCGATTTCA 671841 36 100.0 30 .................................... GCAATGGATCAATTGAAGGCTCGTCAACAA 671907 36 100.0 31 .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 671974 36 100.0 29 .................................... GAACTCTTAAAGTATCTTTTAGGACACTT 672039 36 100.0 30 .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 672105 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 672171 36 100.0 29 .................................... TGTACGTTCAAACGGTTCTCTTTTAATTT 672236 36 100.0 30 .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 672302 36 100.0 30 .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 672368 36 100.0 30 .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 672434 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 672499 36 100.0 29 .................................... CATTACCTTTGTTTGCGTTGTTTGATTCT 672564 36 97.2 29 ............................A....... GTTAACTGAACTCGAGTGTTGGCGCTTGA 672629 36 97.2 30 ............................A....... ACAGGCTTAAAGAATCATTACAGTTTGCTA 672695 36 97.2 30 ............................A....... TTGACCGTGCAAAAATTAATCACAAGGCGC 672761 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 672827 35 86.1 0 T.........................-.CA.C.... | TC [672859] ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.7 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //