Array 1 2131-2998 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUF01000060.1 Kurthia sibirica strain NBRC 101530 sequence060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2131 29 100.0 36 ............................. CGAAGAAGTCACGCAAGGCTACGATGATAGTTATAT 2196 29 100.0 37 ............................. ACATACGAAGTAAACGGAAATGGCTATAAAATTTTAA 2262 29 100.0 36 ............................. CGCTGTAGCAGATGTATCTAAATCATCGAGTAACAA 2327 29 100.0 35 ............................. TTAGTATCTTTCGGGATTGCAATATCTTTAAAAAT 2391 29 100.0 35 ............................. AATTGTGAAATATCGAAATCCAACACTTGAGATTT 2455 29 100.0 37 ............................. TACTTTATTGAGTGGCTAAGGTGTCTATATAAAGTAT 2521 29 100.0 34 ............................. ATGGCTGACGTAACAAATGACTGGGATATTGTCG 2584 29 100.0 35 ............................. AGAGCGACTTAGACGAGCCGAGGCGCTACTTGCAG 2648 29 100.0 36 ............................. AAATAGATGATGAAGCGTATTTAGTTCCGCAACATG 2713 29 100.0 36 ............................. GTTGTTCTTTTCTATAGACCAACAATATCATCTTAT 2778 29 100.0 35 ............................. GCTAGTCTACGAAAAAGACGAGTCGGAGCAACTTG 2842 29 100.0 35 ............................. GATTAAACAGTAAACATTAATAAACGTTGTCATAC 2906 29 100.0 35 ............................. CCAACTTAAATGACTAGTGGCTGCTGGTAACTCGA 2970 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 100.0 36 CTTTAAATCCCTCTTAGTTCAGATAAAAC # Left flank : AGAGTTCCTTCGTACTTCTTGCTAAACGATCCAATTTATACACAACAAAACGGTCGCCTTTGGCAGCGGCCTTAATAGCCTGTTGTAACTCCAGCCTTTCTTTTTTCCGTGAAGAAATCTTTTCCTCATAAATGACACATTCCTTTTGTTGCTCCTTCGCGTACTTTTCAATGGCTTGTCGCTGCATATCTAAATGTTGATCTTCTGTACTGACACGGATATATCCAATGATTCTCAATTTTCTTCACTCCTATTAAAAATACGCATTTTAGACTTTTTTTATTCCTCAATATGTCTACGTCCATACGTTTTATAAAATTTTAAGTATAGACGAGTTTATAGACAAAAACCACTAAAAAAACACCCCTTCAACATGAATTGAGGGGATGCTTTTAATTTGTCTATAAAACGATGGTTTTTTAGAGTGTTTGATTTATCTCTATTTTGAATAGCTATCGTATATTTCTATTCAATTTACTGTTGCCATTCCAGTTTAAGTA # Right flank : CAGCGGCTTAAAACCCTATTAGACTAATGTTTTCATTCTACATTTAGCAGCGAACCCCTAGTCGTGTAAATCAACAATTTCAAATTAACGGCTTAAAATACTGATATAACTAGCTTTCTCTTGTTTTTTCTAAAAAAATCCAGGATGCACCAATTAAAAAAATATATCCATATCACCTTTTTCATGCCCATGTAATTCTTTCTTTAGATGGCGTGGATTCTCTATAATATAATAGTATAAACTATCTTGCATTGGATCAATAATAGATTCTACCGCTTTTCTACATTTTAAAAATTGGGTTTTTGTAATTTCACCTTCAAATACTGAATTTTGAGTCCAAGTTAAATATTCTTTCAATTTTTTACAAACTTTTCCTACTCTTTTTTCATTCACATCATACGTAATAATAACAAACATATTTTCACCACCACGCTTTCAATGGTTTATATGTTGTATCACCAATTACATGTTTAATCAATTTATAGCACTCTAGACGAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCTCTTAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 20782-19420 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUF01000003.1 Kurthia sibirica strain NBRC 101530 sequence003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20781 32 100.0 35 ................................ GGTAAAAAATACGGGAATGGTAGCAAGCCTAGCTG 20714 32 100.0 34 ................................ ACTATTCACCGACTTTTGAAAGCTTTGTATAACG 20648 32 100.0 35 ................................ CGTATCGTCGAAGTGACGGTGCATTAAGCAAAGAA 20581 32 100.0 36 ................................ CAGCCCCATAATCCACCCACTTCTCTATTTTTAGGT 20513 32 100.0 35 ................................ GTGTCTAATCAAAGCGATACTAAAAATTATCGACG 20446 32 100.0 35 ................................ ATTTCATATCCTAATTTTAACAATGAAACTACTTT 20379 32 100.0 33 ................................ AATATGAACGCAATCGAAAAATACGAAATCGAA 20314 32 100.0 34 ................................ TATAGAAAGAGGTGAAAAAAATGGAACGTACATT 20248 32 100.0 35 ................................ AGTTTCAACACTTAATGTCGTAACGACAGAAAAAT 20181 32 100.0 36 ................................ TTCATGATATTTTGATAGTAAGTGTCGGATAAGCTC 20113 32 100.0 35 ................................ TATTTAATTCAAATTGTTGGTATAAAATATCTTCT 20046 32 96.9 36 .......................A........ TACTAATTCGACTCCTGAAGCTGGCACCGGATATAT 19978 32 100.0 33 ................................ ATATCTTTTGGCTGCAAAACGGTTTTAAATTTC 19913 32 100.0 33 ................................ GTCAAACGACTGCAAAGTTGAGATACCGTCAAA 19848 32 100.0 36 ................................ AAATTATTAACATCTCCAACGTATTTTTCGGAGCAA 19780 32 100.0 33 ................................ TAATAATAATTGTACAGTCGGTAACCATTCTTG 19715 32 100.0 34 ................................ GAACTAATCGCAGAAGGTAAATACGAGGTAACAA 19649 32 100.0 35 ................................ ATGAAACGTGCAGAAGCCAACCCGAATTATCGTGG 19582 32 96.9 33 ..........G..................... CCGATGCGTTAGAAATGGCCATTAGCGTAAGCG 19517 32 100.0 34 ................................ TTATCAGGTAATTGGGTGGATTCAATTGGGCAGT 19451 32 90.6 0 ......................A.G...G... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.3 35 GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Left flank : GGAGATTCAGAAGAATACCCGCCTTTTTTATGGAAATAGGAGGATACACGCATGCTAGTTGTGATTACTTATGATGTGAAAACATCAGGTGTAGGTGGCAATAAAAGATTAAGACAGGTCGCTAAAAAATGTGAATCCTACGGTTTAAGAGTACAAAATTCAGTTTTTGAATGTAATATTGATGCTGCACAGTTAGTTAAGTTAAGGTATGATTTAATCAAAATTATAAATGCGTCAGAAGATAGCTTACGATTTTATAGATTAGGTAATAATTACAAATCGAAAGTTGAACATATTGGTACAAAAGATACATTTGATTTAGATGAACCACTTATTTTTTAAGTGCGAACTATAAGCTCTCATAAAATCTTAGGGGGGTTCGCACCTGTTTTTAGCAAAAAGGATAATATATAATAGATGATTTATCCAAAAAAAGTAAATAAAATAAAAATAATGTTATTTTTCTGTTTTATTTACTTTATATTATCACTTTTTTTGCA # Right flank : TGTATAAAGAGCATGAAACAAAATGGTTGGGACTGATCCCTTCGGTTTAGACAAAACAAAAAAGCACCTTCAAGAAATGGGTATAAATACCTGTTATTCTTTGAGGGTGTATTTTTTATGGGCATATGTATAAGTGATCCGATGAACTTAAAATAAAAGTTATTCAGATGGCATTCGCTGGTGCTCCAATCAACCGGATTTTAGTTTTTAACTTATAAATTCTCGAAAAGTACTTAATTTTCTTATTTATAATACAATTGAAATTCTGTTCATAGTTTGAGAAAACGCTATCATTTCTATTTTTTTTACTTATAATAAATTCAAGAACAAAATATGAGGGCGTGAACATAATTTCACGTGATTGTGAGGTAAGTCCATGTATTCAAAATTAGAAATGATTCAAGTTGCAAAATTATACTATGAGATGAATTTAACTCAAAAGGAAATTGCTGATCGCTTAAGTTATTCAAGGGCGACCATTAGTAGAATTATTGATGCAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //